View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20262_low_38 (Length: 453)
Name: NF20262_low_38
Description: NF20262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20262_low_38 |
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Alignment Details
Target: chr1 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 1 - 424
Target Start/End: Complemental strand, 43393953 - 43393530
Alignment:
| Q |
1 |
agacaaaaatgaaagtcctagctagtttctaataggcatgcacaacattaagaaaagtacaattaaagaattgacataacctactttacatgacatattc |
100 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43393953 |
agacaaaaatgaaagtccaagctagtttctaataggcatgcacaacattaagaaaagtacaattaaagaattgacataacctactttacatgacatattc |
43393854 |
T |
|
| Q |
101 |
tagctactagctaccatgcttaaaataagtaggcttttgacattaagaaactttgctgctaaaagagggaaggaccttgtttgtgttgacaatgacatgc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43393853 |
tagctactagctaccatgcttaaaataagtaggcttttgacattaagaaactttgctgctaaaagagggaaggaccttgtttgtgttgacaatgacatgc |
43393754 |
T |
|
| Q |
201 |
aatatgcatccaaaaactttcgcaagttaaataaatacagagttgcgtacaacctatagnnnnnnnnnnnnaataagatgcgtatactgctagggaaatg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||||||||||||||||||| |
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| T |
43393753 |
aatatgcatccaaaaactttcgcaagttaaataaatatagagttgcgtacaacctatagttttttatttttaataagttgcgtatactgctagggaaatg |
43393654 |
T |
|
| Q |
301 |
tttggtatataaggcatgtaaagtgttttccatctaagatgcgtgaatcagtaatttgttgaaaatatctggtacacggttcagttgttgtggtatatct |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43393653 |
tttggtatataaggcatgtaaagtgttttccatctaagatccgtgaatcagtaatttgttgaaaatatctggtacacggttcagttgttgtggtatatct |
43393554 |
T |
|
| Q |
401 |
tcatatacagacaatcatgaatgt |
424 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
43393553 |
tcatatacagacaatcatgaatgt |
43393530 |
T |
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