View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20262_low_41 (Length: 449)
Name: NF20262_low_41
Description: NF20262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20262_low_41 |
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Alignment Details
Target: chr5 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 15 - 434
Target Start/End: Complemental strand, 27509346 - 27508916
Alignment:
| Q |
15 |
aatatccttattaaggctgcatcaattttatttagtgaagatcttaagaacagttatgcatttgcatgcctcacacgttaataattcaactttattagta |
114 |
Q |
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| T |
27509346 |
aatatccttattaaggctgcatcaattttagttagtgaagatcttaagaacagttatgcatttgcatgcctcacacgttaataattcaactttattagta |
27509247 |
T |
|
| Q |
115 |
gtattttggattgtagtcctcattcactggtctcatttccattgct------------gaatctctcgttcgtgctaaatttcagtaactgttcagacat |
202 |
Q |
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| T |
27509246 |
gtattttggattgtagtcctcattcactggtctcatttccattgctttattgcttgctgaatctctcgttcgtgctaaatttcagtaactgttcag-cac |
27509148 |
T |
|
| Q |
203 |
ataatgatgaatgatgaaaaacactagccatgtttttccataaactaggttcttttgtctttattcggtctctctttacatacaaccatagctactaatt |
302 |
Q |
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| T |
27509147 |
ataatgatgaatgatgaaaaacactagccatgtttttccataaaataggttcttttgtctttattcggtctctctttacatacaaccatagctactaatt |
27509048 |
T |
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| Q |
303 |
ttcaaattaatgtacattaatgaccttgatcatcttcgtcatcttttacctaattatagcacaagactttaaaatgccataaaataaactgaacaaaatt |
402 |
Q |
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| T |
27509047 |
ttcaaattaatgtacattaatgaccttgatcatcttcgtcatcttttacctaattatagcacaagactttaaaatgccataaaataaactgaacaaaatt |
27508948 |
T |
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| Q |
403 |
atttaattaattaaccaaatgatgaagaactt |
434 |
Q |
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| T |
27508947 |
atttaattaattaaccaaatgatgaagaactt |
27508916 |
T |
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