View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20262_low_42 (Length: 448)
Name: NF20262_low_42
Description: NF20262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20262_low_42 |
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Alignment Details
Target: chr8 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 12 - 430
Target Start/End: Original strand, 41730550 - 41730970
Alignment:
| Q |
12 |
atgaattacttgatttctaatcaacgacttaagttgactgactgcagtgactgcgggaaacatgattgctgatgtttcaatttctgattgctaactgtac |
111 |
Q |
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| T |
41730550 |
atgaattacttgatttctaatcaacgacttaagttgactgactgcagtgactgtgggaaacatgattgctgatgtttcaatttctgattgctaactgtac |
41730649 |
T |
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| Q |
112 |
tagtattaatttaatgcctccatgataataaacatcatggaagttcacaatcttacatagggtatacatgatactcaacattttatgttttgctagagaa |
211 |
Q |
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| T |
41730650 |
tagtattaatttaatgcctccatgataataaacatcatggaagttcacaatcttacatagggtatacatgatactcaacattttatgttttgctagagaa |
41730749 |
T |
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| Q |
212 |
ataaagataagtttttcaataaatggaaacttgtcataaaaatgttaaaattagtacatcaaacaaattactcaatgtcttcaatatatt---ctcatta |
308 |
Q |
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| T |
41730750 |
ataaagataagtttttcaataaatggaaacttgtcataaaaatgtt-aaattagtacatcaaacaaattactcaatgtcttcaatatattctcctcatta |
41730848 |
T |
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| Q |
309 |
ttttgctttatgagaatttcagggaaaagaggagaggacaaggtgccattagattgggatactcggttgagaatagctttaggtgcagcaagaggcattg |
408 |
Q |
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| T |
41730849 |
ttttgctttatgagaatttcagggaaaagaggagaggacaaggtgccattagattgggatactcggttgagaatagctttaggtgcagcaagaggcattg |
41730948 |
T |
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| Q |
409 |
ctcaaatccatgtcgagaatgg |
430 |
Q |
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| T |
41730949 |
ctcaaatccatgtcgagaatgg |
41730970 |
T |
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Back To:
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Target: chr5 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 311 - 419
Target Start/End: Complemental strand, 2385487 - 2385379
Alignment:
| Q |
311 |
ttgctttatgagaatttcagggaaaagaggagaggacaaggtgccattagattgggatactcggttgagaatagctttaggtgcagcaagaggcattgct |
410 |
Q |
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||||||| ||| ||||||||| |||||||||||||||| |||| | ||||||||| |||||||| | | | ||||||||||||| ||| ||||| ||||| |
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| T |
2385487 |
ttgctttttgaaaatttcaggtaaaagaggagaggacagggtggctttagattggaatactcggatcaaactagctttaggtgctgcacgaggccttgct |
2385388 |
T |
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| Q |
411 |
caaatccat |
419 |
Q |
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| T |
2385387 |
catatccat |
2385379 |
T |
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