View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20262_low_46 (Length: 431)
Name: NF20262_low_46
Description: NF20262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20262_low_46 |
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Alignment Details
Target: chr4 (Bit Score: 375; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 1 - 419
Target Start/End: Complemental strand, 6106853 - 6106435
Alignment:
| Q |
1 |
ccgatgggccagatgactgttccggtagaaaaagtaaagaagaccacccaatgtcctcccaagagattgtgctagttgacgaaactgaagatatactaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |
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| T |
6106853 |
ccgatgggccagatgactgttccggtggagaaagtaaagaagaccacccaatgtcctcccaagagattgtgctagttgacgaatctgaagagatactaga |
6106754 |
T |
|
| Q |
101 |
cggtcatgagttcccaccgtctagcggggattcagctgctgttgttgaagtgaattttgagtgtcttgagaatgattgtttcaatgagccagatgactgt |
200 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
6106753 |
cggtcatgagttcccaccgtctagcagggattcagctgctgttgttgaagtgaattttgagcgtcttgagaatgattgtttcaatgagccagatgactgt |
6106654 |
T |
|
| Q |
201 |
tctggtagagaaagtaaagaagacacagaaataactccagagtggaatttgcagaatgaatttttaaataacaaatggattgactattttcatgttccac |
300 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
6106653 |
tctggtaaagaaagtaaagaagacacagaaataactccagagtggaatttgcagaatgaatttttaaataacaaatggattgacttttttcatgttccac |
6106554 |
T |
|
| Q |
301 |
tacggatggtgaagccatctgatatggatattgttataagtaattctgatgaactaagcagcaaccagtctgcaagctttcctgcaattgaatttgaaga |
400 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
6106553 |
tacggatggtgaagccatctgataaggatattgttataagtaattctgatgaactaagcagcaaccagtttgcaagctttcctgcaattgaatttgaaga |
6106454 |
T |
|
| Q |
401 |
ccacgataactctgatatt |
419 |
Q |
| |
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|||| |||||||||||||| |
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| T |
6106453 |
ccacaataactctgatatt |
6106435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 4 - 224
Target Start/End: Complemental strand, 6107570 - 6107350
Alignment:
| Q |
4 |
atgggccagatgactgttccggtagaaaaagtaaagaagaccacccaatgtcctcccaagagattgtgctagttgacgaaactgaagatatactagacgg |
103 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||| ||||||||||||| || | ||||| |||||||| || |
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| T |
6107570 |
atgggcaagatgactgttccggtagagaaagtaaagaagaccactcaatgtcttcccaagaggctgtgctagttgaccaatcagaagagatactagatgg |
6107471 |
T |
|
| Q |
104 |
tcatgagttcccaccgtctagcggggattcagctgctgttgttgaagtgaattttgagtgtcttgagaatgattgtttcaatgagccagatgactgttct |
203 |
Q |
| |
|
||| |||||| |||| ||||| || ||||||||||| ||||||||| || | ||| |||| ||| |||||| ||||| ||| ||||||||||||||| |
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| T |
6107470 |
tcaagagttctcaccctctagtggtgattcagctgcgcctgttgaagttaaatatgattgtcctgaaaatgatagtttcgatgggccagatgactgttcc |
6107371 |
T |
|
| Q |
204 |
ggtagagaaagtaaagaagac |
224 |
Q |
| |
|
|||| |||||||||||||||| |
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| T |
6107370 |
ggtatagaaagtaaagaagac |
6107350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 6107033 - 6106810
Alignment:
| Q |
1 |
ccgatgggccagatgactgttccggtagaaaaagtaaagaagaccacccaatgtcctcccaagagattgtgctagttgacgaaactgaagatatactaga |
100 |
Q |
| |
|
|||| |||||| |||||| |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| || | ||||| ||||||| |
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| T |
6107033 |
ccgacgggccaaatgactattccggtagagaaagtaaagaagaccacccaatgtcttcccaagagattgtgctagttgaccaatcagaagaggtactaga |
6106934 |
T |
|
| Q |
101 |
cggtcatgagttcccaccgtctagcggggattcagctgctgttgttgaagtgaattttgagtgtcttgagaatgattgtttcaatgagccagatgactgt |
200 |
Q |
| |
|
|||||| |||||| | || ||||| || ||||||| |||| ||||||| | || ||||| |||| ||| ||||| |||| | ||| ||||||||||||| |
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| T |
6106933 |
cggtcaagagttctcgccctctagtggagattcaggtgctcctgttgaaattaaatttgattgtcctgaaaatgactgttccgatgggccagatgactgt |
6106834 |
T |
|
| Q |
201 |
tctggtagagaaagtaaagaagac |
224 |
Q |
| |
|
|| ||| ||||||||||||||||| |
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|
| T |
6106833 |
tccggtggagaaagtaaagaagac |
6106810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 6 - 224
Target Start/End: Complemental strand, 6107208 - 6106990
Alignment:
| Q |
6 |
gggccagatgactgttccggtagaaaaagtaaagaagaccacccaatgtcctcccaagagattgtgctagttgacgaaactgaagatatactagacggtc |
105 |
Q |
| |
|
|||||||||| |||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||| || | ||||| |||||||| |||| |
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|
| T |
6107208 |
gggccagatggctgttccggtcgagaaagtaaagaagaccacccaatgtctccccaagagattgtgctagttgaccaatcagaagagatactagatggtc |
6107109 |
T |
|
| Q |
106 |
atgagttcccaccgtctagcggggattcagctgctgttgttgaagtgaattttgagtgtcttgagaatgattgtttcaatgagccagatgactgttctgg |
205 |
Q |
| |
|
| |||||| | || ||||| || |||||||||||| ||||||||| || ||||| |||| ||| |||||||||| | | | |||| |||||| ||| || |
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| T |
6107108 |
aagagttctctccctctagtggagattcagctgctcctgttgaagttaaatttgattgtcctgaaaatgattgttccgacgggccaaatgactattccgg |
6107009 |
T |
|
| Q |
206 |
tagagaaagtaaagaagac |
224 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
6107008 |
tagagaaagtaaagaagac |
6106990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 2 - 224
Target Start/End: Complemental strand, 6107392 - 6107170
Alignment:
| Q |
2 |
cgatgggccagatgactgttccggtagaaaaagtaaagaagaccacccaatgtcctcccaagagattgtgctagttgacgaaactgaagatatactagac |
101 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||||||||||||||| ||||||| ||||||||| ||||||||||||| | | || || |||||||| |
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|
| T |
6107392 |
cgatgggccagatgactgttccggtatagaaagtaaagaagaccactcaatgtcttcccaagaggctgtgctagttgaccgatcagaggagatactagat |
6107293 |
T |
|
| Q |
102 |
ggtcatgagttcccaccgtctagcggggattcagctgctgttgttgaagtgaattttgagtgtcttgagaatgattgtttcaatgagccagatgactgtt |
201 |
Q |
| |
|
||||| ||||| |||| ||||| || ||||||||||| ||||||||| || ||||| |||| ||| |||||||||||| | | |||||||| ||||| |
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| T |
6107292 |
ggtcaagagttttcaccctctagtggtgattcagctgcccctgttgaagttaaatttgattgtcctgaaaatgattgtttcgacgggccagatggctgtt |
6107193 |
T |
|
| Q |
202 |
ctggtagagaaagtaaagaagac |
224 |
Q |
| |
|
| ||| ||||||||||||||||| |
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| T |
6107192 |
ccggtcgagaaagtaaagaagac |
6107170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 42 - 224
Target Start/End: Complemental strand, 6107712 - 6107530
Alignment:
| Q |
42 |
gaccacccaatgtcctcccaagagattgtgctagttgacgaaactgaagatatactagacggtcatgagttcccaccgtctagcggggattcagctgctg |
141 |
Q |
| |
|
|||||||||||||| |||| | ||||||||| ||||||| || | ||||| |||||||||||||| |||||| |||| ||||| || |||||| ||| | |
|
|
| T |
6107712 |
gaccacccaatgtcgtccccaaagattgtgccagttgaccaatcagaagagatactagacggtcaagagttctcaccctctagtggagattcaactggtc |
6107613 |
T |
|
| Q |
142 |
ttgttgaagtgaattttgagtgtcttgagaatgattgtttcaatgagccagatgactgttctggtagagaaagtaaagaagac |
224 |
Q |
| |
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||| |||||| || ||||| |||| ||| | |||||||||||||| || |||||||||||| ||||||||||||||||||||| |
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|
| T |
6107612 |
ttgctgaagttaaatttgattgtcctgaaagtgattgtttcaatgggcaagatgactgttccggtagagaaagtaaagaagac |
6107530 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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