View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20262_low_5 (Length: 703)
Name: NF20262_low_5
Description: NF20262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20262_low_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 277; Significance: 1e-154; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 277; E-Value: 1e-154
Query Start/End: Original strand, 18 - 329
Target Start/End: Original strand, 43979303 - 43979615
Alignment:
| Q |
18 |
tttgggtctcttttggtcgaagtgcttttacaggtaaactcacgtctcacatgaagctgctatttgtagcttttcaattctggcaaaatcaattctccga |
117 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| ||||||| | |
|
|
| T |
43979303 |
tttgggtctcttttggttgaagtgcttttacaggtaaactcacgtctcacatgaagctgccatttgtagcttttcaattatggcaaaatcgattctccta |
43979402 |
T |
|
| Q |
118 |
cc-atatcatggccattgactgttatgcccctcgttaagcttaaatttcaatttgatgggagaagactatccagctaagggatgaaactgaacgtgtgct |
216 |
Q |
| |
|
|| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43979403 |
cccatatcatggccattgactgttatgctcctcgttaagcttaaatttcaatttgatgggagaagactatccagctaagggatgaaactgaacgtgtgct |
43979502 |
T |
|
| Q |
217 |
ttctcctactatctgaaactgaaagcctctcttttatttctcattgctactgtgatttcgattcctgcaaattcctcttgtactcatgcaagtgttggat |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
43979503 |
ttctcctactatctgaaactgaaagcctctcttttatttctcattgctactgtgatttcgattcctgcaaattcctcttgtactcatgcaagtgttgaat |
43979602 |
T |
|
| Q |
317 |
attgttctttgaa |
329 |
Q |
| |
|
||||||||||||| |
|
|
| T |
43979603 |
attgttctttgaa |
43979615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 271 - 424
Target Start/End: Original strand, 37746019 - 37746177
Alignment:
| Q |
271 |
atttcgattcctgcaaattcctcttgtactcatgcaagt--------gttggatattgttctttgaactcaataaagcaatatgttcatcaattttattc |
362 |
Q |
| |
|
||||| ||||||| ||||||| |||||||||||||||| |||| ||||| ||||||||| |||| || ||| | | ||||||||||| ||| |
|
|
| T |
37746019 |
atttcaattcctgtaaattccatttgtactcatgcaagtctacaagagttgaatattattctttgaattcaaaaatgcagt--gctcatcaatttttttc |
37746116 |
T |
|
| Q |
363 |
atacaagttgtttgatcaattgcttcttagaaattccctcatcacaaggtgataggggataa |
424 |
Q |
| |
|
|||||| ||||||||||||||||| ||| ||||| ||||| |||||||||| | |||||| |
|
|
| T |
37746117 |
atacaaactgtttgatcaattgcttgtta-caattcactcattacaaggtgatggaggataa |
37746177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 601 - 681
Target Start/End: Complemental strand, 41891974 - 41891894
Alignment:
| Q |
601 |
acccattttagtaatttgcatattcaaaagcaattctgatccaacctatccaaacaacatatttgtgataaatcacttttg |
681 |
Q |
| |
|
||||||||||||||||| || || ||||| ||||| |||| ||| || |||||||||||||||| |||||||| ||||| |
|
|
| T |
41891974 |
acccattttagtaatttacacatccaaaatcaattttgattcaaactgtccaaacaacatattttatataaatcatttttg |
41891894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 598 - 659
Target Start/End: Complemental strand, 32606609 - 32606549
Alignment:
| Q |
598 |
aaaacccattttagtaatttgcatattcaaaagcaattctgatccaacctatccaaacaaca |
659 |
Q |
| |
|
|||||||||||| |||||| | |||| ||||||||||| | |||||| |||||||||||||| |
|
|
| T |
32606609 |
aaaacccattttggtaattag-atatgcaaaagcaattttcatccaaactatccaaacaaca |
32606549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 3e-19; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 242 - 378
Target Start/End: Original strand, 48734406 - 48734540
Alignment:
| Q |
242 |
cctctcttttatttctcattgctactgtgatttcgattcctgcaaattcctcttgtactcatgcaagtgttggatattgttctttgaactcaataaagca |
341 |
Q |
| |
|
||||||||| |||||||| |||||| || ||||| ||||||| ||||||| ||| |||||||||||| |||| || || |||||||| |||||||| || |
|
|
| T |
48734406 |
cctctctttcatttctcagtgctaccgtaatttccattcctgtaaattccccttatactcatgcaagagttgaatgttattctttgatttcaataaatca |
48734505 |
T |
|
| Q |
342 |
atatgttcatcaattttattcatacaagttgtttgat |
378 |
Q |
| |
|
|| ||||||||||||||||||||| |||||||| |
|
|
| T |
48734506 |
--gtgctcatcaattttattcatacaaactgtttgat |
48734540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 597 - 681
Target Start/End: Original strand, 48734736 - 48734819
Alignment:
| Q |
597 |
aaaaacccattttagtaatttgcatattcaaaagcaattctgatccaacctatccaaacaacatatttgtgataaatcacttttg |
681 |
Q |
| |
|
||||||||||| |||||||||||| || |||||||| | ||| |||| |||| ||||| |||||||| | |||||||||||||| |
|
|
| T |
48734736 |
aaaaacccattatagtaatttgcacatccaaaagcaggtttgacccaaactattcaaac-acatatttatcataaatcacttttg |
48734819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 603 - 681
Target Start/End: Original strand, 53078306 - 53078384
Alignment:
| Q |
603 |
ccattttagtaatttgcatattcaaaagcaattctgatccaacctatccaaacaacatatttgtgataaatcacttttg |
681 |
Q |
| |
|
||||||||||||||| || || ||||| ||||| |||| ||| || |||||||||||||||| |||||||||||||| |
|
|
| T |
53078306 |
ccattttagtaatttacacatccaaaatcaattttgattcaaactgtccaaacaacatattttatataaatcacttttg |
53078384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 602 - 681
Target Start/End: Complemental strand, 31215525 - 31215446
Alignment:
| Q |
602 |
cccattttagtaatttgcatattcaaaagcaattctgatccaacctatccaaacaacatatttgtgataaatcacttttg |
681 |
Q |
| |
|
|||||||||||||||| || ||||||||||| |||| ||| |||||| |||||||||||| |||||||||||||| |
|
|
| T |
31215525 |
cccattttagtaatttttccatccaaaagcaattttgattcaaactatccgaacaacatattttatataaatcacttttg |
31215446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University