View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20262_low_50 (Length: 414)
Name: NF20262_low_50
Description: NF20262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20262_low_50 |
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Alignment Details
Target: chr1 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 66 - 403
Target Start/End: Complemental strand, 25581707 - 25581369
Alignment:
| Q |
66 |
tttccccttgcctataaggataactgaaaacacaaagacacagtttgaagaccaagctgttataagttacaatcatgatacacaagtataatgagaggaa |
165 |
Q |
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| T |
25581707 |
tttccccttgcctataaggataactgaaaacacaaagacacagtttgaagaccaagctgttataagttacaatcatgatacacaagtataatgagaggaa |
25581608 |
T |
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| Q |
166 |
aggcatgaaagtcataatatgtgctgtgctgtacgaagtatagtatagaaaatgtcattgaaggattgaattgaaagacagggataatcaattaggtgaa |
265 |
Q |
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| T |
25581607 |
aggcatgaaagtcataatatgtgctgtgctgtacgaagtatagtatagaaaatgtcattgaaggattaaattgaaagacagggataatcaattaggtgaa |
25581508 |
T |
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| Q |
266 |
ttgaaggatggtagagggtcggttgggtagttccaagcattg-nnnnnnnggcgactctattaagaccatttaaatcacataaatgcaagagtaattgag |
364 |
Q |
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| T |
25581507 |
ttgaaggatggtagagggtcggttgggtagttccaagcattgaaaaaaaaggcgactctattaagaccatttaaatcacataaatgcaagagtaattgag |
25581408 |
T |
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| Q |
365 |
acagttgagaataatgaaggagatattttgttccctatg |
403 |
Q |
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| T |
25581407 |
acagttgagaataatgaaggagatattttgttccctatg |
25581369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 321 - 391
Target Start/End: Original strand, 42895401 - 42895471
Alignment:
| Q |
321 |
tctattaagaccatttaaatcacataaatgcaagagtaattgagacagttgagaataatgaaggagatatt |
391 |
Q |
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| T |
42895401 |
tctattaagaccatttaaatcacataaatgcaagagtaattgagacagttgagcataatgacggagatatt |
42895471 |
T |
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