View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20262_low_52 (Length: 412)
Name: NF20262_low_52
Description: NF20262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20262_low_52 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 18 - 401
Target Start/End: Original strand, 8158562 - 8158946
Alignment:
| Q |
18 |
aaaggcctacttttttcgctctgaaatacctgattatgacgatgcaagagaagtacccaaagatatg-aagcctttgtgttgnnnnnnngacacgaactc |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
8158562 |
aaaggcctacttttttcgctctgaaatacctgattatgacgatgcaagagaagtacccaaagatatgcaagcctttgtgttgaaaaaaagacacgaactc |
8158661 |
T |
|
| Q |
117 |
attgaaattgtatcagaggttgatgataaaatttctgaagctcttcatggtggcagccaaattccagagtcttatcttgatgatgcaattcggagggcaa |
216 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
8158662 |
attgaaattgtatcagagattgatgataaaatttctgaagctcttcatggtggcagccaaattccagagtcttatctggatgatgcaattcggagggcaa |
8158761 |
T |
|
| Q |
217 |
ctatagcaaggaaatttgtaccaattatcatcagtgatgagagatataaggggatagaagtatttatggagggtgtaattaggtatttgccgagtccaat |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8158762 |
ctatagcaaggaaatttgtaccaattatcataagtgatgagagatatgaggggatagaagtatttatggagggtgtaattaggtatttgccgagtccaat |
8158861 |
T |
|
| Q |
317 |
cgatgttagtaattatgctcttgatcaaaataggaatggcgagaaagttgaattgtctggaagtattgatgctccatttgttgca |
401 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8158862 |
cgatgttagtaattatgctcttgatcaaaataggaatggcgagaaagttgaattgtctggaagtattgatgctccatttgttgca |
8158946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 110 - 399
Target Start/End: Complemental strand, 4084819 - 4084530
Alignment:
| Q |
110 |
cgaactcattgaaattgtatcagaggttgatgataaaatttctgaagctcttcatggtggcagccaaattccagagtcttatcttgatgatgcaattcgg |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |
|
|
| T |
4084819 |
cgaactcattgaaattgtatcagaggttgatgataaaatttatgaagctcttcatggtggcagccaaattccagagtcttatctcgatggtgcaattcgt |
4084720 |
T |
|
| Q |
210 |
agggcaactatagcaaggaaatttgtaccaattatcatcagtgatgagagatataaggggatagaagtatttatggagggtgtaattaggtatttgccga |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || || ||||||||||||||||||||||||||||||||| |
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|
| T |
4084719 |
agggcaactatagcaaggaaatttgtaccaattatcatcagtgatgagagatatgaggggttaaaactatttatggagggtgtaattaggtatttgccga |
4084620 |
T |
|
| Q |
310 |
gtccaatcgatgttagtaattatgctcttgatcaaaataggaatggcgagaaagttgaattgtctggaagtattgatgctccatttgttg |
399 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||| |
|
|
| T |
4084619 |
gtccaatcgatgttagtaattatgctcatgatcaaaataggaatggtgagaaagttgaattgtttggaagtattgatgcaccatttgttg |
4084530 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 18 - 397
Target Start/End: Complemental strand, 44302161 - 44301762
Alignment:
| Q |
18 |
aaaggcctacttttttcgctctgaaatacctgattatgacgatgcaa------gagaagtacccaaagatatg-aagcctttgtgttgnnnnnnngacac |
110 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||||| |||||| | |||||||||||||||||||| |||||||||||||| ||| | |
|
|
| T |
44302161 |
aaaggcctacttttttcgctttgaaaaacctgattataacgatgtagaagtaggagaagtacccaaagatatgcaagcctttgtgttgaagaaaagacgc |
44302062 |
T |
|
| Q |
111 |
gaactcattgaaattgtatcagaggttgatgataaaatttctgaagctcttcatggtggcagccaaattccagagtcttatcttgatgatgcaattcgga |
210 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||||| |||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
44302061 |
gaactcattgaaattgtatcggaggttgatgataaactttctgaagcttttcatggtggaagccaaattctagagtcttatctcgatgatgcaattcgtg |
44301962 |
T |
|
| Q |
211 |
gggcaactatagcaaggaaatttgtaccaat---------tatcatcagtgatgagagatataagggg----atagaagtatttatggagggtgtaatta |
297 |
Q |
| |
|
||||||| ||||||||||||||||||||||| ||| ||||||| |||||||||| ||||| ||||| || ||||||||| |||||||| |
|
|
| T |
44301961 |
gggcaaccatagcaaggaaatttgtaccaatttttatgggtattatcagtggtgagagatatgaggggttaattagaactacttatggaggatgtaatta |
44301862 |
T |
|
| Q |
298 |
ggtatttgccgagtccaatcgatgttagtaattatgctcttgatcaaaataggaatggcgagaaagttgaattgtctggaagtattgatgctccatttgt |
397 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
44301861 |
ggtatttgccgagtccaatcgatgttagtaattatgctcttgatcaaaataagaatggtgagaaagttgaattgtctggaagtgttgatgcgccatttgt |
44301762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 66 - 401
Target Start/End: Complemental strand, 44307209 - 44306864
Alignment:
| Q |
66 |
agaagtacccaaagatatg-aagcctttgtgttgnnnnnnngacacgaactcattgaaattgtatcagaggttgatgataaaatttctgaagctcttcat |
164 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||| | ||||| |
|
|
| T |
44307209 |
agaagtagccaaagatatgcaagcctttgtgttgaaaaaaagacgtgaactcattgaaattgtatcagaggttgatgataaactttctgaagattttcat |
44307110 |
T |
|
| Q |
165 |
ggtggcagccaaattccagagtcttatcttgatgatgcaattcggagggcaactatagcaaggaaatttgtaccaattatcat---------cagtgatg |
255 |
Q |
| |
|
||||||||||||||| |||||||| ||| |||||||||||||| |||||||| |||||| ||||||||||||||||| |||| |||||| | |
|
|
| T |
44307109 |
ggtggcagccaaatttcagagtctgttctcgatgatgcaattcgtagggcaaccatagcacggaaatttgtaccaattttcatgggtactttcagtgacg |
44307010 |
T |
|
| Q |
256 |
agagatataaggggatagaagtatttatggagggtgtaattaggtatttgccgagtccaatcgatgttagtaattatgctcttgatcaaaataggaatgg |
355 |
Q |
| |
|
||||||| ||||| ||||| || ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
44307009 |
agagatacgaggggttagaactacttagggagggtgtaattaggtatttgccaagtccaatcgatgttagtaattatgctcttgatctaaataagaatgg |
44306910 |
T |
|
| Q |
356 |
cgagaaagttgaattgtctggaagtattgatgctccatttgttgca |
401 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
44306909 |
tgagaaaattgaattgtctggaagtattgatgcgccatttgttgca |
44306864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 18 - 401
Target Start/End: Complemental strand, 43896809 - 43896410
Alignment:
| Q |
18 |
aaaggcctacttttttcgctctgaaatacctgattatgacgatgca------agagaagtacccaaagatatg-aagcctttgtgttgnnnnnnngacac |
110 |
Q |
| |
|
|||||||||||||||||||||||||| |||| ||||| | ||| | || |||||||| |||||||| |||||||||||||| || | |
|
|
| T |
43896809 |
aaaggcctacttttttcgctctgaaacaccttattataagcatgtagaagtaagtgaagtacctgaagatatgcaagcctttgtgttgaagaaaagaagc |
43896710 |
T |
|
| Q |
111 |
gaactcattgaaattgtatcagaggttgatgataaaatttctgaagctcttcatggtggcagccaaattccagagtcttatcttgatgatgcaattcgga |
210 |
Q |
| |
|
|||||||||||||| || |||||||||||||||||| ||||||||||| |||| ||||||||||||||| |||| ||| ||| |||||||||||||| | |
|
|
| T |
43896709 |
gaactcattgaaatcgtctcagaggttgatgataaactttctgaagcttttcacggtggcagccaaatttcagaatctgttctcgatgatgcaattcgta |
43896610 |
T |
|
| Q |
211 |
gggcaactatagcaaggaaatttgtaccaattatcat---------cagtgatgagagatataaggggatagaagtatttatggagggtgtaattaggta |
301 |
Q |
| |
|
||||||||||| ||| |||||||||||||||| |||| | ||||||||||| || | ||| ||||| || |||||||||||||||||||||| |
|
|
| T |
43896609 |
gggcaactatatcaatgaaatttgtaccaattttcatgggtgttatctgtgatgagagacatgatgggttagaactacttatggagggtgtaattaggta |
43896510 |
T |
|
| Q |
302 |
tttgccgagtccaatcgatgttagtaattatgctcttgatcaaaataggaatggcgagaaagttgaattgtctggaagtattgatgctccatttgttgca |
401 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||| |
|
|
| T |
43896509 |
tttgccgggtccaatcgatgttagtaattatgctcttgatcaaaataggaatggtgagaaagttgaattgtctggaagcattgatgcgccatttgttgca |
43896410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 18 - 296
Target Start/End: Complemental strand, 44317445 - 44317160
Alignment:
| Q |
18 |
aaaggcctacttttttcgctctgaaatacctgattatgacgatg--caag----agaagtacccaaagatatg-aagcctttgtgttgnnnnnnngacac |
110 |
Q |
| |
|
|||||| |||||||||| |||||||| |||| ||||| | |||| |||| |||||||||| |||||||| |||||||||||||| ||||| |
|
|
| T |
44317445 |
aaaggcttacttttttccctctgaaacaccttattataaggatgtacaagtaggagaagtacccgaagatatgcaagcctttgtgttgaagaaaagacac |
44317346 |
T |
|
| Q |
111 |
gaactcattgaaattgtatcagaggttgatgataaaatttctgaagctcttcatggtggcagccaaattccagagtcttatcttgatgatgcaattcgga |
210 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||| |||||||||| ||||||| ||| |||||||||||||| | |
|
|
| T |
44317345 |
gaactcattcaaattgtatcagaggttgatgataaactttctgaagcttttcatggtggaagccaaattctagagtctgttctcgatgatgcaattcgta |
44317246 |
T |
|
| Q |
211 |
gggcaactatagcaaggaaatttgtaccaattatcatcagtgatgagagatataaggggatagaagtatttatggagggtgtaatt |
296 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||||| | |||||||||||| || ||||| ||||| |||||||||||||||||||| |
|
|
| T |
44317245 |
gggcaactatatcaatgaaatttgtaccaattatctttagtgatgagagaaatgaggggttagaactatttatggagggtgtaatt |
44317160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 291 - 397
Target Start/End: Complemental strand, 44312753 - 44312647
Alignment:
| Q |
291 |
gtaattaggtatttgccgagtccaatcgatgttagtaattatgctcttgatcaaaataggaatggcgagaaagttgaattgtctggaagtattgatgctc |
390 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |||||| | |
|
|
| T |
44312753 |
gtaattaggtatttgccaagtccaatcgatgttagtaattatgctcttgatcaaaataagaatggtgagaaagttgaattgtctggaagtgttgatgagc |
44312654 |
T |
|
| Q |
391 |
catttgt |
397 |
Q |
| |
|
||||||| |
|
|
| T |
44312653 |
catttgt |
44312647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 18 - 401
Target Start/End: Complemental strand, 18702411 - 18702018
Alignment:
| Q |
18 |
aaaggcctacttttttcgctctgaaatacctgatt---------atgacgatgcaagagaagtacccaaagatatg-aagcctttgtgttgnnnnnnnga |
107 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| ||| || | | ||||| ||||| |||||||| |||||||||||||| || |
|
|
| T |
18702411 |
aaaggcctacttttttcgctctgaaacacctgattataattatgatgtagaagtaggagaaatacccgaagatatgcaagcctttgtgttgaagaaaaga |
18702312 |
T |
|
| Q |
108 |
cacgaactcattgaaattgtatcagaggttgatgataaaatttctgaagctcttcatggtggcagccaaattccagagtcttatcttgatgatgcaattc |
207 |
Q |
| |
|
| |||||||||||||||||| |||||||||||||||||| ||||| ||||| |||||||||||||| |||||||||||||| ||| ||||||||||||| |
|
|
| T |
18702311 |
cgcgaactcattgaaattgtgtcagaggttgatgataaactttctaaagcttttcatggtggcagcaaaattccagagtctgttctcgatgatgcaattc |
18702212 |
T |
|
| Q |
208 |
ggagggcaactatagcaaggaaatttgtaccaattatcatcagtgatgagagatataaggggatagaagtatttatggagggtgtaattaggtatttgcc |
307 |
Q |
| |
|
| |||||||||||| ||| ||||||||||||||||||||| |||||||||| ||| || | || || |||| |||||||||||||||||||||||||| |
|
|
| T |
18702211 |
gtagggcaactatatcaatgaaatttgtaccaattatcattggtgatgagagctatgagacgttaaaactattaatggagggtgtaattaggtatttgcc |
18702112 |
T |
|
| Q |
308 |
gagtccaatcgatgttagtaattatgctcttgatcaaaataggaatggcgagaaagttgaattgtctggaagtattgatgctccatttgttgca |
401 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
18702111 |
aagtccaatcgatgttagtaattatgctcttgatctaaataagaatggtgagaaagttgaattgtctggaagtattgatgcaccatttgttgca |
18702018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 300 - 387
Target Start/End: Original strand, 35856591 - 35856678
Alignment:
| Q |
300 |
tatttgccgagtccaatcgatgttagtaattatgctcttgatcaaaataggaatggcgagaaagttgaattgtctggaagtattgatg |
387 |
Q |
| |
|
||||||||||||||||| ||| | ||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
35856591 |
tatttgccgagtccaattgatttgagtaattatgctcttgatcaagctaggaatggagagaaagtagaattgtctggaagtattgatg |
35856678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 190 - 247
Target Start/End: Original strand, 35856474 - 35856531
Alignment:
| Q |
190 |
atcttgatgatgcaattcggagggcaactatagcaaggaaatttgtaccaattatcat |
247 |
Q |
| |
|
||||||||| | ||||||| ||||| || |||||||||||||||||||||||| |||| |
|
|
| T |
35856474 |
atcttgatggtacaattcgtagggctacaatagcaaggaaatttgtaccaattttcat |
35856531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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