View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20262_low_54 (Length: 406)
Name: NF20262_low_54
Description: NF20262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20262_low_54 |
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Alignment Details
Target: chr1 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 1 - 390
Target Start/End: Complemental strand, 36504154 - 36503765
Alignment:
| Q |
1 |
aagatatatcagaatgagcaaaaccatcttcactggtataagatgcacacccataagatattgtaaccatatatttgttcttgaatatggtgatggcttg |
100 |
Q |
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| T |
36504154 |
aagatatatcagaatgagcaaaaccatcttcactggtataagacgcacaaccataagatattgtaaccatatatttgttcttgaatatggtgatggcttg |
36504055 |
T |
|
| Q |
101 |
ttatatgaagaaaaaagctccataattttttccataaactgcgaaactgctttgaacttgaatatgatcagacagatgggtatagcaaatgtaagagaga |
200 |
Q |
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| T |
36504054 |
ttatatgaagaaaaaagctccataattttttccataaactgcgaaactgctttgaacttgaatatgatcagacagatgggtatagcaaatgtaagagaga |
36503955 |
T |
|
| Q |
201 |
ttgtaagtttcctttgcaatgaattctcctctccataaatccaataaatccaataagtcatattgacataaagattatgaaaataataaagaagtggtgc |
300 |
Q |
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| T |
36503954 |
ttgtaagtttcctttgcaatgaattctcctctccataaatccaataaatccaataagtcatattcacataaagattatgaaaataataaagaagtggtgc |
36503855 |
T |
|
| Q |
301 |
cacaaatgcacccaccgcagtaagattaatcaaataagccttgaagtttatcattgaggcttttcttcgtcttgtttatgcactaaaaac |
390 |
Q |
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| T |
36503854 |
cacaaatgcacccaccgcagtaagattaatcaaataagccttgaagtttatcattgaggcttttcttcgtcttgtttatgcactaaaaac |
36503765 |
T |
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