View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20262_low_58 (Length: 392)
Name: NF20262_low_58
Description: NF20262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20262_low_58 |
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Alignment Details
Target: chr1 (Bit Score: 340; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 14 - 377
Target Start/End: Original strand, 11849771 - 11850134
Alignment:
| Q |
14 |
agattgcagtgaaaaggatgaaatctgaaatggttggtgacgaagggttgaatgagatcaagtctgaaatcgcggttctcactagggttcgacacaggca |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11849771 |
agattgcagtgaaaaggatgaaatctgaaatggttggtgacgaagggttaaatgagatcaagtctgaaatcgcggttctcactagggttcgacacaggca |
11849870 |
T |
|
| Q |
114 |
tttggttgcactccatggctattgcttggatgacaatgagaaacttcttgtctttgaatacatgcctcagggaactcttagtcaacatctctttgactgg |
213 |
Q |
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|||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
11849871 |
tttggttgcactccatggctattgcttggacgacaacgagaaacttcttgtctttgaatacatgcctcagggaactcttagtcaacatatctttgactgg |
11849970 |
T |
|
| Q |
214 |
aaagatgatgggtcgaaaccgctcggatggaaatgtaggctttccattgccttggatgttgctagaggtgttgaatatcttcatggtctggctcagcaaa |
313 |
Q |
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| T |
11849971 |
aaagacgatgggtcgaaaccgctcggatggaaatgtaggctttccattgccttggatgttgctagaggtgttgaatatcttcatggtctggctcagcaaa |
11850070 |
T |
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| Q |
314 |
ttttcatccacagggatctgaaaccatcaaatatcttgcttggagatgatatgcgcgctaaagt |
377 |
Q |
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| T |
11850071 |
ttttcatccacagggatctgaagccatcaaatatcttgcttggagatgatatgcgcgctaaagt |
11850134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 14 - 377
Target Start/End: Original strand, 11836400 - 11836763
Alignment:
| Q |
14 |
agattgcagtgaaaaggatgaaatctgaaatggttggtgacgaagggttgaatgagatcaagtctgaaatcgcggttctcactagggttcgacacaggca |
113 |
Q |
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| T |
11836400 |
agattgcagttaaaaggatgaaatctgaaatggttggtgaccaagggctgaatgagatcaagtccgaaatcgcggttctcactaaggttcgacacaggca |
11836499 |
T |
|
| Q |
114 |
tttggttgcactccatggctattgcttggatgacaatgagaaacttcttgtctttgaatacatgcctcagggaactcttagtcaacatctctttgactgg |
213 |
Q |
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|||||||||||||| ||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
11836500 |
tttggttgcactccttggctattgcttggacgaaaatgagaaacttcttgtcttcgaatacatgcctcagggaactcttagtcaacatctctttgattgg |
11836599 |
T |
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| Q |
214 |
aaagatgatgggtcgaaaccgctcggatggaaatgtaggctttccattgccttggatgttgctagaggtgttgaatatcttcatggtctggctcagcaaa |
313 |
Q |
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| T |
11836600 |
aaagacgacgggttgaaaccgcttggatggaagagaaggctttccattgccttagatgttgctagaggtgttgaatatcttcatggtctggctcagcaaa |
11836699 |
T |
|
| Q |
314 |
ttttcatccacagggatctgaaaccatcaaatatcttgcttggagatgatatgcgcgctaaagt |
377 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |
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| T |
11836700 |
ttttcatccacagggatctgaaaccatcgaatatcttgcttggagatgatatgcgtgctaaagt |
11836763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 15 - 379
Target Start/End: Complemental strand, 11857357 - 11856993
Alignment:
| Q |
15 |
gattgcagtgaaaaggatgaaatctgaaatggttggtgacgaagggttgaatgagatcaagtctgaaatcgcggttctcactagggttcgacacaggcat |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |
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| T |
11857357 |
gattgcagtgaaaaggatgaaatctgaaatggttggtgatgaagggttgaatgagatcaagtccgaaatcgcggttctcactaaggttcgacacaggcat |
11857258 |
T |
|
| Q |
115 |
ttggttgcactccatggctattgcttggatgacaatgagaaacttcttgtctttgaatacatgcctcagggaactcttagtcaacatctctttgactgga |
214 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
11857257 |
ttggttgcactccatggctattgcttggacgacaatgagaaacttcttgtttttgaatacatgcctcagggaactcttagtcaacatctctttgagtgga |
11857158 |
T |
|
| Q |
215 |
aagatgatgggtcgaaaccgctcggatggaaatgtaggctttccattgccttggatgttgctagaggtgttgaatatcttcatggtctggctcagcaaat |
314 |
Q |
| |
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|||| || |||| |||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| || ||||| |
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| T |
11857157 |
aagacgacgggttgaaaccgctcggatggaagagtaggctttccattgccttggatgttgcccgaggtgttgaatatctccatggtctggcacaacaaat |
11857058 |
T |
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| Q |
315 |
tttcatccacagggatctgaaaccatcaaatatcttgcttggagatgatatgcgcgctaaagttg |
379 |
Q |
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| T |
11857057 |
tttcattcatagagatctgaaaccaacaaatattttgcttggagatgatatgcgcgctaaagttg |
11856993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 104 - 377
Target Start/End: Complemental strand, 27444046 - 27443773
Alignment:
| Q |
104 |
gacacaggcatttggttgcactccatggctattgcttggatgacaatgagaaacttcttgtctttgaatacatgcctcagggaactcttagtcaacatct |
203 |
Q |
| |
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|||||| |||| ||||||| || | |||| |||||||||| || | |||||||||| ||||| |||||||| ||||||| || ||||||||||||||||| |
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| T |
27444046 |
gacacaagcatctggttgcgcttcgtggccattgcttggaagagagtgagaaacttattgtccttgaatacctgcctcaaggcactcttagtcaacatct |
27443947 |
T |
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| Q |
204 |
ctttgactggaaagatgatgggtcgaaaccgctcggatggaaatgtaggctttccattgccttggatgttgctagaggtgttgaatatcttcatggtctg |
303 |
Q |
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||||||| ||||||| || || | |||| |||| |||||| |||||||||||||| ||||||||||| ||||| |||||||||||||||| | | |
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| T |
27443946 |
ctttgaccggaaagacgacggattgaaaggactcgaatggaagacaaggctttccattgcattggatgttgcaagaggcgttgaatatcttcatgatttt |
27443847 |
T |
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| Q |
304 |
gctcagcaaattttcatccacagggatctgaaaccatcaaatatcttgcttggagatgatatgcgcgctaaagt |
377 |
Q |
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|| || |||| |||||||||||||||||| || |||||||||||||||||||||||| ||||| | |||||||| |
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| T |
27443846 |
gcacaacaaagtttcatccacagggatcttaagccatcaaatatcttgcttggagataatatgtgtgctaaagt |
27443773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 259 - 377
Target Start/End: Complemental strand, 44796805 - 44796687
Alignment:
| Q |
259 |
attgccttggatgttgctagaggtgttgaatatcttcatggtctggctcagcaaattttcatccacagggatctgaaaccatcaaatatcttgcttggag |
358 |
Q |
| |
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||||| || ||||||||||||||| |||||||||||||||| | | || |||||||| |||||||||||| | |||||||| || || |||||||||| |
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| T |
44796805 |
attgctttagatgttgctagaggtattgaatatcttcatgggttaacccaacaaatttttatccacagggatatcaaaccatctaacattttgcttggag |
44796706 |
T |
|
| Q |
359 |
atgatatgcgcgctaaagt |
377 |
Q |
| |
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| || ||||| || ||||| |
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| T |
44796705 |
aagacatgcgagcaaaagt |
44796687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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