View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20262_low_59 (Length: 391)

Name: NF20262_low_59
Description: NF20262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20262_low_59
NF20262_low_59
[»] chr7 (10 HSPs)
chr7 (14-211)||(12413890-12414087)
chr7 (285-391)||(12413719-12413825)
chr7 (308-391)||(18091975-18092058)
chr7 (308-391)||(18061898-18061981)
chr7 (116-209)||(20396188-20396281)
chr7 (308-391)||(20396009-20396095)
chr7 (308-391)||(18123948-18124031)
chr7 (116-206)||(18123745-18123835)
chr7 (130-211)||(18091785-18091866)
chr7 (130-211)||(18061708-18061789)
[»] scaffold0108 (2 HSPs)
scaffold0108 (298-391)||(15844-15937)
scaffold0108 (110-206)||(16036-16132)


Alignment Details
Target: chr7 (Bit Score: 186; Significance: 1e-100; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 14 - 211
Target Start/End: Complemental strand, 12414087 - 12413890
Alignment:
Q  14 caatattaacatttattcacaagaaaattcgctagaagcagcatttccctaacatttaatcaaatgttttgaaaattgaatagcaagatgagatgagatt 113  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12414087 caatattaacatttattcacaagaaaattcgctagaagcagtatttccctaacatttaatcaaatgttttgaaaattgaatagcaagatgagatgagatt 12413988  T
Q  114 aattacacaatgctgcgatttaagaagccaccaaacttttgttgaaggccaagcgggtagtcaaaatgcatgatagtcacaaaaggctcaatacctac 211  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  12413987 aattacacaatgctgcgatttaagaaaccaccaaacttttgttgaagggcaagcgggtagtcaaaatgcatgatagtcacaaaaggctcaatacctac 12413890  T

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Target: chr7; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 285 - 391
Target Start/End: Complemental strand, 12413825 - 12413719
Alignment:
Q  285 aaggaatgtggtcggtttaatctataccatttttaagtaattcattgatcaaattgttgtagaagttgataccttctttgtttatcccccctctcaaggt 384  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  12413825 aaggaatgtggtcggtttaatctataccatttttaagtaattcattgatcaaattgttgtagaagttgataccttctttatttatcccccctctcaaggt 12413726  T
Q  385 tccatct 391  Q
    |||||||    
T  12413725 tccatct 12413719  T

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Target: chr7; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 308 - 391
Target Start/End: Original strand, 18091975 - 18092058
Alignment:
Q  308 ataccatttttaagtaattcattgatcaaattgttgtagaagttgataccttctttgtttatcccccctctcaaggttccatct 391  Q
    |||||||| || ||||| || ||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||    
T  18091975 ataccattgttgagtaactcgttgatcaaattgttgtagaagttgataccttctttgtttatacctcctttcaaggttccatct 18092058  T

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Target: chr7; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 308 - 391
Target Start/End: Original strand, 18061898 - 18061981
Alignment:
Q  308 ataccatttttaagtaattcattgatcaaattgttgtagaagttgataccttctttgtttatcccccctctcaaggttccatct 391  Q
    |||||||| || ||||| || ||||||||||||||||||||||||||||||||||||||||| || ||| | ||||||||||||    
T  18061898 ataccattgttgagtaactcgttgatcaaattgttgtagaagttgataccttctttgtttatacctccttttaaggttccatct 18061981  T

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Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 116 - 209
Target Start/End: Complemental strand, 20396281 - 20396188
Alignment:
Q  116 ttacacaatgctgcgatttaagaagccaccaaacttttgttgaaggccaagcgggtagtcaaaatgcatgatagtcacaaaaggctcaatacct 209  Q
    ||||||||||  ||||||||||||||| ||||  |||||||||||  | |  || |||||||| |||| ||||||||||||||| |||||||||    
T  20396281 ttacacaatggagcgatttaagaagccgccaatattttgttgaagagctaatggatagtcaaagtgcaggatagtcacaaaaggttcaatacct 20396188  T

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Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 308 - 391
Target Start/End: Complemental strand, 20396095 - 20396009
Alignment:
Q  308 ataccatttttaagtaattcattgatcaaattgttgtagaag---ttgataccttctttgtttatcccccctctcaaggttccatct 391  Q
    |||||||| || ||||| || |||||||||||||||||||||   | |||||||||||||||||| || ||| | ||||||||||||    
T  20396095 ataccattgttgagtaactcgttgatcaaattgttgtagaagaagtcgataccttctttgtttatacctccttttaaggttccatct 20396009  T

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Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 308 - 391
Target Start/End: Original strand, 18123948 - 18124031
Alignment:
Q  308 ataccatttttaagtaattcattgatcaaattgttgtagaagttgataccttctttgtttatcccccctctcaaggttccatct 391  Q
    |||||||| || ||||| || |||||||||||||||||||| | |||||||||||| ||||  || ||| | ||||||||||||    
T  18123948 ataccattgttgagtaactcgttgatcaaattgttgtagaactcgataccttctttatttacacctccttttaaggttccatct 18124031  T

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Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 206
Target Start/End: Original strand, 18123745 - 18123835
Alignment:
Q  116 ttacacaatgctgcgatttaagaagccaccaaacttttgttgaaggccaagcgggtagtcaaaatgcatgatagtcacaaaaggctcaata 206  Q
    ||||||||||  ||||||||||||||| ||||  |||||||||||  | |  || |||||||| |||| ||||||||||||||| ||||||    
T  18123745 ttacacaatggagcgatttaagaagccgccaatattttgttgaagagctaatggatagtcaaagtgcaggatagtcacaaaaggttcaata 18123835  T

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Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 130 - 211
Target Start/End: Original strand, 18091785 - 18091866
Alignment:
Q  130 gatttaagaagccaccaaacttttgttgaaggccaagcgggtagtcaaaatgcatgatagtcacaaaaggctcaatacctac 211  Q
    |||||||||||||||||||||||| ||||||  | |  || |||||||  ||||  |||||||||||||| |||||||||||    
T  18091785 gatttaagaagccaccaaactttttttgaagagctaatggatagtcaaggtgcaatatagtcacaaaaggttcaatacctac 18091866  T

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Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 211
Target Start/End: Original strand, 18061708 - 18061789
Alignment:
Q  130 gatttaagaagccaccaaacttttgttgaaggccaagcgggtagtcaaaatgcatgatagtcacaaaaggctcaatacctac 211  Q
    ||||| |||||||||||||||||| ||||||  | |  || |||||||  ||||  |||||||||||||| |||||||||||    
T  18061708 gatttgagaagccaccaaactttttttgaagagctaatggatagtcaaggtgcaatatagtcacaaaaggttcaatacctac 18061789  T

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Target: scaffold0108 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 298 - 391
Target Start/End: Complemental strand, 15937 - 15844
Alignment:
Q  298 ggtttaatctataccatttttaagtaattcattgatcaaattgttgtagaagttgataccttctttgtttatcccccctctcaaggttccatct 391  Q
    ||||| ||| |||||||||| |||||| ||||||||||||||||||||||||||||| |||||||||||||| || ||| ||||||||||||||    
T  15937 ggtttgatccataccattttcaagtaagtcattgatcaaattgttgtagaagttgatgccttctttgtttatacctcctttcaaggttccatct 15844  T

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Target: scaffold0108; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 110 - 206
Target Start/End: Complemental strand, 16132 - 16036
Alignment:
Q  110 gattaattacacaatgctgcgatttaagaagccaccaaacttttgttgaaggccaagcgggtagtcaaaatgcatgatagtcacaaaaggctcaata 206  Q
    |||||||||||||||  |||||||||||||||| | || |||||| |||||| | || |||||||||||||||||||||||||||||||||||||||    
T  16132 gattaattacacaatagtgcgatttaagaagccgcgaagcttttggtgaagggctagtgggtagtcaaaatgcatgatagtcacaaaaggctcaata 16036  T

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