View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20262_low_61 (Length: 385)
Name: NF20262_low_61
Description: NF20262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20262_low_61 |
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Alignment Details
Target: chr7 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 12 - 366
Target Start/End: Complemental strand, 18473241 - 18472887
Alignment:
| Q |
12 |
tatactcgacagttaccatacattggttacatatttaatattgtattacacttatggatagttaccacaagatgtcatgacaagtccattttgaggggca |
111 |
Q |
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| T |
18473241 |
tatacttgacagttaccatacattggttacatatttaatattgtattacacttatggatagttaccacaagatgccatgacaagtccattttgaggggca |
18473142 |
T |
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| Q |
112 |
tggttcatttacacttattatccacgaacaaaaacttggacaattggaccaatacagtgcaattgtctattaaaactaacgatgaagacannnnnnnncg |
211 |
Q |
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| T |
18473141 |
tggttcatttacacttattatccgcgaacaaaaacttggacaattggaccaatacagtgcaattgtctattaaaactaacgatgaagacattttttttcg |
18473042 |
T |
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| Q |
212 |
cagaactgaaggggacaaccccaaattggtgatattcaaaatatcgacgaaccaaaaatgctcaaggtgcccgacacctttgtctcctcggtgaaattta |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |
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| T |
18473041 |
cagaactgaaggggacaaccccaaattggtgatattcaaaatatcgacgaaccaaaaatgctcaaggtccccgacacctttgtctcctcggcgaaattta |
18472942 |
T |
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| Q |
312 |
ctgtttaatgaagccacgtgtctacaacatgacaagtgctcgagtatcaccgaac |
366 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
18472941 |
ctgtttaatgaagccacgtatctacaacatgacaagtgctcgagtatcaccgaac |
18472887 |
T |
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