View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20262_low_62 (Length: 381)
Name: NF20262_low_62
Description: NF20262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20262_low_62 |
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Alignment Details
Target: chr7 (Bit Score: 321; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 16 - 371
Target Start/End: Original strand, 38634939 - 38635297
Alignment:
| Q |
16 |
agctacatactgggtatttcgggacaagtaaagagtgtttattcttccacgaatttcaagcgaaaatgcatcacgaatctcaacaacttcagggagcctg |
115 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||| |
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| T |
38634939 |
agctacatactgagtatttcgggacaagtaaagagtgtttattcttccacgaatttcaagcgaaaacgcattacgaatctcaacaacttcagggaacctg |
38635038 |
T |
|
| Q |
116 |
tccaaaatttgtgcacaaaagttgcaatgatatgatatgattacaagaactgagaaaaaagttgaaagtaattcataagatcacaaatggagtgtttata |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
38635039 |
tccaaaatttgtgcacaaaagttgcaatgatatgatatgattacaagaactgagaaaaaagttgaaagtaattcataggatcacaaatggagtgtttata |
38635138 |
T |
|
| Q |
216 |
catgtgtactgagtatttaaagccattaattgagattttgatcatgatcattaatgcatgcacatgtattaattat---aacaaactatggctatgaagt |
312 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
38635139 |
catgtgtactgagtagttaaagccattaattgagattttgatcatgatcattaatgcatgcacatgtattaattataacaacaaactatggctatgaagt |
38635238 |
T |
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| Q |
313 |
aaacactatacataatagaaaagttaagagcaaacctagaaggaggcatattagtatta |
371 |
Q |
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| T |
38635239 |
aaacactatacataatagaaaagttaagagcaaacctagaaggaggcatattagtatta |
38635297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 16 - 247
Target Start/End: Original strand, 38632203 - 38632419
Alignment:
| Q |
16 |
agctacatactgggtatttcgggacaagtaaagagtgtttattcttccacgaatttcaagcgaaaatgcatcacgaatctcaacaacttcagggagcctg |
115 |
Q |
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|||||||||||| |||||||| |||||| |||||||| ||| ||||||||||||||||||||||| ||||||||| |||| |||||||||||| |||| |
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| T |
38632203 |
agctacatactgagtatttcgagacaaggcaagagtgtctatccttccacgaatttcaagcgaaaacacatcacgaagctcagcaacttcagggaacctg |
38632302 |
T |
|
| Q |
116 |
tccaaaatttgtgcacaaaagttgcaatgatatgatatgattacaagaactgagaaaaaagttgaaagtaattcataagatcacaaatgg--agtgttta |
213 |
Q |
| |
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|||||| ||| |||||| |||| | |||| ||||| || |||||||| |||||||||||||||||||||||||| ||| |||| |
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| T |
38632303 |
tccaaatttt-----------ttgcaa------gataaaaatacaggaacttagcaaaaagttaaaagtaattcataagatcacaaatggatagtattta |
38632385 |
T |
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| Q |
214 |
tacatgtgtactgagtatttaaagccattaattg |
247 |
Q |
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||||||||| || |||| ||||||||||| |||| |
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| T |
38632386 |
tacatgtgtgcttagtagttaaagccattgattg |
38632419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 257 - 314
Target Start/End: Original strand, 38632444 - 38632498
Alignment:
| Q |
257 |
tcatgatcattaatgcatgcacatgtattaattataacaaactatggctatgaagtaa |
314 |
Q |
| |
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|||| |||||||||||||||||| |||||||||||||||||||| ||||||||||| |
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|
| T |
38632444 |
tcataatcattaatgcatgcaca---attaattataacaaactatgtctatgaagtaa |
38632498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 90 - 135
Target Start/End: Original strand, 8639327 - 8639372
Alignment:
| Q |
90 |
gaatctcaacaacttcagggagcctgtccaaaatttgtgcacaaaa |
135 |
Q |
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| T |
8639327 |
gaatctcaacaacttcagggaacctgtccaaaatttgtgcacaaaa |
8639372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 147
Target Start/End: Complemental strand, 35295705 - 35295574
Alignment:
| Q |
16 |
agctacatactgggtatttcgggacaagtaaagagtgtttattcttccacgaatttcaagcgaaaatgcatcacgaatctcaacaacttcagggagcctg |
115 |
Q |
| |
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|||| |||| || |||||| |||||||| | | |||||||| | ||||||||||||||| | | || |||||| |||| ||||||| |||| |||| |
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| T |
35295705 |
agctgcatattgagtatttggggacaaggcaggggtgtttatcatcccacgaatttcaagccatagcacagcacgaagctcagcaacttcggggaacctg |
35295606 |
T |
|
| Q |
116 |
tccaaaatttgtgcacaaaagttgcaatgata |
147 |
Q |
| |
|
||||||||||||| |||||||||||| |||| |
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|
| T |
35295605 |
tccaaaatttgtgtgcaaaagttgcaaagata |
35295574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 94 - 136
Target Start/End: Original strand, 35219494 - 35219536
Alignment:
| Q |
94 |
ctcaacaacttcagggagcctgtccaaaatttgtgcacaaaag |
136 |
Q |
| |
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||||||||||||||||| |||||||||||||||||| |||||| |
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| T |
35219494 |
ctcaacaacttcagggaacctgtccaaaatttgtgcccaaaag |
35219536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 147
Target Start/End: Original strand, 35225342 - 35225390
Alignment:
| Q |
99 |
caacttcagggagcctgtccaaaatttgtgcacaaaagttgcaatgata |
147 |
Q |
| |
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|||||||||| | |||||||||||||||||||||||||||||| |||| |
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| T |
35225342 |
caacttcaggaaatctgtccaaaatttgtgcacaaaagttgcaaagata |
35225390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 34309727 - 34309784
Alignment:
| Q |
21 |
catactgggtatttcgggacaagtaaagagtgtttattcttccacgaatttcaagcga |
78 |
Q |
| |
|
||||||| |||||| |||||||| |||||||||| || | ||||||||||||||||| |
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|
| T |
34309727 |
catactgagtatttggggacaaggaaagagtgttaatcatcccacgaatttcaagcga |
34309784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 142
Target Start/End: Original strand, 35474321 - 35474368
Alignment:
| Q |
94 |
ctcaacaacttcagggagcctgtccaaaatttgtgcacaaaagttgcaa |
142 |
Q |
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|||||||| |||||||| ||||||||||| |||| |||||||||||||| |
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| T |
35474321 |
ctcaacaaattcaggga-cctgtccaaaaattgttcacaaaagttgcaa |
35474368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 78
Target Start/End: Complemental strand, 899514 - 899465
Alignment:
| Q |
29 |
gtatttcgggacaagtaaagagtgtttattcttccacgaatttcaagcga |
78 |
Q |
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| T |
899514 |
gtattttgggacaaggaaaaagtgttaattattccacgaatttcaagcga |
899465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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