View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20262_low_63 (Length: 378)
Name: NF20262_low_63
Description: NF20262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20262_low_63 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 319; Significance: 1e-180; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 14 - 375
Target Start/End: Complemental strand, 35755842 - 35755472
Alignment:
| Q |
14 |
caaaaaacaggttttgggctgagatcaatggccttccctgtgacataccattgcctgatcctaacatatacatcgatgatgtagattggaatgcaactat |
113 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
35755842 |
caaaaaacaggttttgggctgagatcaacggccttccctgtgacataccattgcctgatcctaacatatacctcgatgatgtagattggaatgcaactat |
35755743 |
T |
|
| Q |
114 |
cgaccctgaactatatctggatgtggaaagagaagcagtagcccgccgcaacatagaagaaaaaggcgaggaggccgtgattctcagtagctcttttctc |
213 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35755742 |
tgatcctgaactatatctggatgtggaaagagaagcagtagcccgccgcaacatagaagaaaaaggcgaggaggccgtgattctcagtagctcttttctc |
35755643 |
T |
|
| Q |
214 |
ttgagtcattccttttcaggtccaggatggggggacgaaga---------agaagttagaaaaccttctgagccaaattatgctggtcagggatgggaat |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35755642 |
ttgagtcattccttttcaggtccaggatggggggacgaagaagaaaaagaagaagttagaaagccttctgagccaaattatgctggtcagggatgggaat |
35755543 |
T |
|
| Q |
305 |
caaatcaacatgaaaataatgaaacaaactcttgggaacaatatcttcctccaattgatgaacatgcaaaa |
375 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35755542 |
caaatcaacatgaaaataatgaaacaaactcttgggaacaatatcttcctccaattgatgaacatgcaaaa |
35755472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 14 - 308
Target Start/End: Complemental strand, 35785938 - 35785641
Alignment:
| Q |
14 |
caaaaaacaggttttgggctgagatcaatggccttccctgtgacataccattgcctgatcctaacatatacatcgatgatgtagattggaatgcaactat |
113 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||||||||||| ||| |
|
|
| T |
35785938 |
caaaaaacaggttttgggctgagatcaacggccttccctgcaacataccattgcctgatcctaacatttacatcgacgatgtagattggaatgcaagtat |
35785839 |
T |
|
| Q |
114 |
cgaccctgaactatatctggatgtggaaagagaagcagtagcccgccgcaacatagaagaaaaaggcgaggaggccgtgattctcagtagctcttttctc |
213 |
Q |
| |
|
||| ||||||| ||| |||| |||||||||||||||| |||||||||||||| || ||||| |||||| |||||||||| |||| ||| | ||| |
|
|
| T |
35785838 |
tgactctgaactttatttggaggtggaaagagaagcagaggcccgccgcaacatggatcaaaaacccgaggaaatcgtgattctcggtagttctctcctc |
35785739 |
T |
|
| Q |
214 |
ttgagtcattccttttcaggtccaggatggggggacgaagaagaa---gttagaaaaccttctgagccaaattatgctggtcagggatgggaatcaaa |
308 |
Q |
| |
|
|||| ||| ||||| || ||||| |||||||||||| |||||||| || | ||| || ||||| ||||| ||||||| ||||||||||||| |||| |
|
|
| T |
35785738 |
ttgaatcagtccttgtctggtcctggatggggggacaaagaagaaaacgtaacaaagccctctgaaccaaactatgctgctcagggatgggaaacaaa |
35785641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 14 - 378
Target Start/End: Complemental strand, 35761000 - 35760615
Alignment:
| Q |
14 |
caaaaaacaggttttgggctgagatcaatggccttccctgtgacataccattgcctgatcctaacatatacatcgatgatgtagattggaatgcaactat |
113 |
Q |
| |
|
|||||||||| ||||||||||||||||| | ||||||| |||||||||||||||||||| ||| |||| |||||||||||||||||||||| | | |
|
|
| T |
35761000 |
caaaaaacagattttgggctgagatcaacgaatttccctgcgacataccattgcctgatcccgacactcacattgatgatgtagattggaatgcaagtgt |
35760901 |
T |
|
| Q |
114 |
cgaccctgaactatatctggatgtggaaagagaagcagtagcccgccgcaacatagaagaaaaaggcgaggaggccgtgattctcagtagctcttttctc |
213 |
Q |
| |
|
||||||||||| |||| |||||||||||||||||||| |||||||| ||||| |||||||||||||||| || |||||||| |||| ||| ||||| |
|
|
| T |
35760900 |
ggaccctgaactttatcaggatgtggaaagagaagcagaggcccgccgtaacatggaagaaaaaggcgaggcagctgtgattcttggtagttctcttctc |
35760801 |
T |
|
| Q |
214 |
ttgagtcattccttttcaggtc---------------caggatggggggacgaag------aagaagttagaaaaccttctgagccaaattatgctggtc |
292 |
Q |
| |
|
|||| ||| |||||||| |||| | |||||||||||||||| ||||||| | ||| |||||||| || |||||||||| || |
|
|
| T |
35760800 |
ttgaatcagtccttttccggtcctggatggggacctactggatggggggacgaagaagaaaaagaagtaacaaagccttctgaaccgaattatgctgctc |
35760701 |
T |
|
| Q |
293 |
agggatgggaatcaaatcaacatgaaaataatgaaacaaactcttgggaacaatatcttcctccaattgatgaacatgcaaaagaa |
378 |
Q |
| |
|
||||||||||||| || ||||||||||||||||||||||||||||||||||| |||| | |||| ||| ||||||| |||||||| |
|
|
| T |
35760700 |
agggatgggaatcgaaccaacatgaaaataatgaaacaaactcttgggaacagtatcgtgctcctgttgttgaacattcaaaagaa |
35760615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 14 - 344
Target Start/End: Complemental strand, 35789790 - 35789454
Alignment:
| Q |
14 |
caaaaaacaggttttgggctgagatcaatggccttccctgtgacataccattgcctgatcctaacatatacatcgatgatgtagattggaatgcaactat |
113 |
Q |
| |
|
||||||||||||| |||||||||||||| | | ||||||| |||||||||| ||||||||||||||| ||||| |||||| |||| ||||| |||| | |
|
|
| T |
35789790 |
caaaaaacaggttctgggctgagatcaacgacattccctgcgacataccatcgcctgatcctaacatttacatagatgatatagactggaacgcaagcgt |
35789691 |
T |
|
| Q |
114 |
cgaccctgaactatatctggatgtggaaagagaagcagtagcccgccgcaacatagaagaaaaaggcgaggaggccgtgattctcagtagctcttttctc |
213 |
Q |
| |
|
|||| ||||||| |||||||||||||||||||||| || ||| |||||||||| ||||||||||||||||| | ||||||||||||||| ||| | || |
|
|
| T |
35789690 |
cgacactgaactttatctggatgtggaaagagaagtagaggcctgccgcaacattgaagaaaaaggcgaggaagtcgtgattctcagtagttctctcttc |
35789591 |
T |
|
| Q |
214 |
ttgagtcattccttttcaggtccaggatggggggacgaagaag-----aagtt-agaaaaccttctgagccaaattatgctggtcagggatgggaatcaa |
307 |
Q |
| |
|
||| ||| ||||| || ||||||||||||||||||||||||| ||||| | ||| |||| ||| |||||| ||| || || |||||||||||| | |
|
|
| T |
35789590 |
ttggatcagtccttatcgggtccaggatggggggacgaagaagacgaaaagttaacaaagccttatgaaccaaatgatgttgctcggggatgggaatcga |
35789491 |
T |
|
| Q |
308 |
atcaacatgaaaataatgaaacaaactcttgggaaca |
344 |
Q |
| |
|
| ||||||| |||||| ||| ||||| |||| |||| |
|
|
| T |
35789490 |
accaacatggaaataaccaaaaaaacttttggaaaca |
35789454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 14 - 334
Target Start/End: Complemental strand, 35799433 - 35799092
Alignment:
| Q |
14 |
caaaaaacaggttttgggctgagatcaatggccttccctgtgacataccattgcctgatcctaacatatacatcgatgatgtagattggaatgcaactat |
113 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||| ||||||| |||||||||||||| |||||||||| ||||| ||||||||||||| ||||||| | | |
|
|
| T |
35799433 |
caaaaaacaggtattgggctgagatcaacggcattccctgggacataccattgcccaatcctaacatttacatagatgatgtagattcaaatgcaagtgt |
35799334 |
T |
|
| Q |
114 |
cgaccctgaactatatctggatgtggaaagagaagcagtagcccgccgcaacatagaagaaaaaggcgaggaggccgtgattctcagtagctcttttctc |
213 |
Q |
| |
|
||| ||||||| ||| ||||||||||| |||||||| ||||||| ||||||| |||||||||| |||| ||| |||||||| | || ||| | ||| |
|
|
| T |
35799333 |
cgattctgaacttcatcgggatgtggaaatagaagcagaggcccgccacaacataaaagaaaaaggagaggcggctgtgattctaggcagttctctcctc |
35799234 |
T |
|
| Q |
214 |
ttgagtcattccttttcaggtc---------------caggatggggggacgaagaag-----aagtt-agaaaaccttctgagccaaattatgctggtc |
292 |
Q |
| |
|
|||| ||| |||| ||| |||| | ||||||||||||||||||| ||||| | ||| |||||||| ||||||||||||| || |
|
|
| T |
35799233 |
ttgaatcagtcctcttccggtcttggattgggacctactggatggggggacgaagaagacgaaaagttaacaaagccttctgaaccaaattatgctgctc |
35799134 |
T |
|
| Q |
293 |
agggatgggaatcaaatcaacatgaaaataatgaaacaaact |
334 |
Q |
| |
|
|||||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
35799133 |
tgggatgcgaatcaaaccaacatgaaaataatgaaacaaact |
35799092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 19 - 151
Target Start/End: Complemental strand, 35766478 - 35766346
Alignment:
| Q |
19 |
aacaggttttgggctgagatcaatggccttccctgtgacataccattgcctgatcctaacatatacatcgatgatgtagattggaatgcaactatcgacc |
118 |
Q |
| |
|
||||||||||||||||| ||||| ||| ||||||| |||||||||||||||||||||||||| ||||||| ||||| |||| | |||| | |||||| |
|
|
| T |
35766478 |
aacaggttttgggctgatatcaacggctttccctgcgacataccattgcctgatcctaacattcacatcgacgatgtggattcaaccgcaagtgtcgacc |
35766379 |
T |
|
| Q |
119 |
ctgaactatatctggatgtggaaagagaagcag |
151 |
Q |
| |
|
|| |||| ||||| ||||||||||| ||||||| |
|
|
| T |
35766378 |
ctcaactttatcttgatgtggaaagtgaagcag |
35766346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 262 - 343
Target Start/End: Complemental strand, 35766211 - 35766130
Alignment:
| Q |
262 |
agaaaaccttctgagccaaattatgctggtcagggatgggaatcaaatcaacatgaaaataatgaaacaaactcttgggaac |
343 |
Q |
| |
|
|||||||||||||| |||||||||||| ||| |||||||||| || |||||||||||| ||||||||||||| ||||||| |
|
|
| T |
35766211 |
agaaaaccttctgaaccaaattatgcttctcaaggatgggaattgaaccaacatgaaaatgatgaaacaaactcctgggaac |
35766130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 325 - 378
Target Start/End: Complemental strand, 35785648 - 35785595
Alignment:
| Q |
325 |
gaaacaaactcttgggaacaatatcttcctccaattgatgaacatgcaaaagaa |
378 |
Q |
| |
|
|||||||||||||||||||| |||| | |||| |||||||||||||||||||| |
|
|
| T |
35785648 |
gaaacaaactcttgggaacagtatcatgctcctgttgatgaacatgcaaaagaa |
35785595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University