View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20262_low_67 (Length: 371)
Name: NF20262_low_67
Description: NF20262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20262_low_67 |
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Alignment Details
Target: chr2 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 18 - 361
Target Start/End: Complemental strand, 32632918 - 32632574
Alignment:
| Q |
18 |
agttcaaacctcagtcacggtgtgcgacctagctatttccccattttt-atcaatggagcaaacacttgtggactcttttaatggcatttaccaactaga |
116 |
Q |
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| T |
32632918 |
agttcaaacctcagtcacagtgtgcgacctagctatttccccattttttaccaattgggcaaacacttgtggactcttttaatggtatttaacaactaga |
32632819 |
T |
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| Q |
117 |
caaagtcaatttaaggattaacttatatgcaaataggcgtaagtggatgaagaacctgataaataaagtatgagacgagaaaagtgacagcaatgatgag |
216 |
Q |
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| T |
32632818 |
caaagtcaatttaaggattaacttatatgctaataggcgtaagtggatgaagaacctgataaataaagtatgagacgagaaaagtgacagcaatgatgag |
32632719 |
T |
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| Q |
217 |
agaaatcatcaaggtcacattgtgtaatgttgtagagaattggaacaatgtaggaatctgcattatgagaagtggtataacagagaaaaccataattctt |
316 |
Q |
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| T |
32632718 |
agaaatcatcaaggtcacattgtgtaatgttgtagagaattggaacaatgtaggaatctgcattatgaggagtggtataacagagaaaagcataattctt |
32632619 |
T |
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| Q |
317 |
gccatctttctagtgtctacatccatagtaataccataacctatg |
361 |
Q |
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| T |
32632618 |
gccatctttctagtgtctacatccatagtaataccataacctatg |
32632574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 126 - 360
Target Start/End: Complemental strand, 32614122 - 32613888
Alignment:
| Q |
126 |
tttaaggattaacttatatgcaaataggcgtaagtggatgaagaacctgataaataaagtatgagacgagaaaagtgacagcaatgatgagagaaatcat |
225 |
Q |
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| T |
32614122 |
tttaaagattaacttaaaagcaaatacgagtaagtgaatggggcacctggtaaatgaagtatgagatgagaaaagtgacagcaatgatgagagaaactat |
32614023 |
T |
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| Q |
226 |
caaggtcacattgtgtaatgttgtagagaattggaacaatgtaggaatctgcattatgagaagtggtataacagagaaaaccataattcttgccatcttt |
325 |
Q |
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||||||||||||| |||||||||||||||| | |||||| || ||||||||||| ||||| ||||||||||||||||||||||| ||||| ||||||||| |
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| T |
32614022 |
caaggtcacattgcgtaatgttgtagagaaatagaacaaagtgggaatctgcatgatgaggagtggtataacagagaaaaccatgattctcgccatcttt |
32613923 |
T |
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| Q |
326 |
ctagtgtctacatccatagtaataccataacctat |
360 |
Q |
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| T |
32613922 |
ctagtgtctatatccatagtaatgccataacctat |
32613888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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