View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20262_low_73 (Length: 363)
Name: NF20262_low_73
Description: NF20262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20262_low_73 |
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Alignment Details
Target: chr8 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 45547714 - 45547376
Alignment:
| Q |
1 |
cgtctcgcaaagaatttcagaaaagttcgtgatttagttgaacaaaatataacttctgatttttgtttgaggttgacgagaaatcgttcaaaggatgcta |
100 |
Q |
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| T |
45547714 |
cgtctcgcaaagaatttcagaaaagttcgtgatttagttgaacaaaatgtaacatctgatttttgtttgaggttgacgagaaatcgttcaaaggatgcta |
45547615 |
T |
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| Q |
101 |
ggatgcacaacataccagaagttgatgaggtggcagctctaattgtcggagatactgacagtatagaatatggaagtgatattatcgttagaaaggaatc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |
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| T |
45547614 |
ggatgcacaacataccagaagttgatgaggtggcagctctaattgtcggagatactgacagtatagaatatggaagagatattatcattagaaaggaatc |
45547515 |
T |
|
| Q |
201 |
aggtcatttggaaagacttcatgagacacatacttcctttattccattacaatatcctttgatctttccttacggtgaagatggtttctctgaaaatatt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45547514 |
aggtcatttggaaagacttcatgagacacatacttcctttattccattacaatatcctttgatctttccttacggtgaagatggtttctctgaaaatatt |
45547415 |
T |
|
| Q |
301 |
aaaataagtgaaaaggaggaagccaatccagaccgtact |
339 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
45547414 |
aaaataagtgaaaaggaggaagccaatccagaccgtact |
45547376 |
T |
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