View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20262_low_76 (Length: 357)
Name: NF20262_low_76
Description: NF20262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20262_low_76 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 20 - 345
Target Start/End: Original strand, 29319245 - 29319570
Alignment:
| Q |
20 |
gctcattcctctgttcaatgcagcctttgatagaacatccataattgcatatccaaattgcaaaaacaaaactgctataaatggctttgctttttctatc |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29319245 |
gctcattcctctgttcaatgcagcctttgatagaacatccataattgcatatccaaattgcaaaaacaaaactgctataaatggctttgctttttctatc |
29319344 |
T |
|
| Q |
120 |
caattttgtgtttgaaggtagatctccatcttcttcttgtatagagagcttccaaccaccttaattaatgtgtctgttagacacaagaatgaaataaaat |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29319345 |
caattttgtgtttgaaggtagatctccatcttcttcttgtatagagagcttccaaccaccttaattaatgtgtctgttagacacaagaatgaaataaaat |
29319444 |
T |
|
| Q |
220 |
aacgtagggggtcatatttatattggagagtgacgtgatcaaattctagtattttggtagtgtgctttcaaaattaattagtagtagtggtttccatcaa |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29319445 |
aacgtagggggtcatatttatattggagagtgacgtgatcaaattctagtattttggtagtgtgctttcaaaattaattagtagtagtggtttccatcaa |
29319544 |
T |
|
| Q |
320 |
tagaaaaattgcaattgaaggcatct |
345 |
Q |
| |
|
||||||||||| |||||||||||||| |
|
|
| T |
29319545 |
tagaaaaattgtaattgaaggcatct |
29319570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 103
Target Start/End: Complemental strand, 40215442 - 40215357
Alignment:
| Q |
18 |
cagctcattcctctgttcaatgcagcctttgatagaacatccataattgcatatccaaattgcaaaaacaaaactgctataaatgg |
103 |
Q |
| |
|
|||||||||||| |||||| ||||| ||| || |||| ||||||| ||||||||||||||||| | || |||||||| ||||| |
|
|
| T |
40215442 |
cagctcattcctttgttcagtgcagacttggacagaatatccataccagcatatccaaattgcaagagcactactgctatgaatgg |
40215357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University