View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20262_low_77 (Length: 357)
Name: NF20262_low_77
Description: NF20262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20262_low_77 |
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| [»] chr4 (4 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 93; Significance: 3e-45; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 165 - 357
Target Start/End: Complemental strand, 55246727 - 55246521
Alignment:
| Q |
165 |
caatatttaaccttaaataaaataagtagatttttgtatttttacataagtaacg-ata----ct--------ttgggatcatcatccactagatggttg |
251 |
Q |
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| T |
55246727 |
caatatttaaccttaaataaaataagtagatttttgtatttttacagaagtaacggatatcttctaattaaagttgggatcatcatccactagatggttg |
55246628 |
T |
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| Q |
252 |
gtttctcacgggaaaattgcttttctgacattcaaaacgtcatatttatacatggacctgacgtttgta-cctccaacggtaattagatttatccgtcgg |
350 |
Q |
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| T |
55246627 |
gtttctcatgggaaaattaattttctgacattcaaaacgtcatatttacatatagaaatgacatttttatcccccaacggtaattagatttatccgacgg |
55246528 |
T |
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| Q |
351 |
tagttaa |
357 |
Q |
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||||||| |
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| T |
55246527 |
tagttaa |
55246521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 20 - 96
Target Start/End: Complemental strand, 55246872 - 55246796
Alignment:
| Q |
20 |
aattatttttgaaagatacacatacattgatttaacaaaggagactaaaatttctgacatgaaatatatattgtgga |
96 |
Q |
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| T |
55246872 |
aatttttttttaaagatacacatacattgatttaacaaaggaaactaaaatttctcacatgaaatatatattgtgga |
55246796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 263 - 324
Target Start/End: Original strand, 9041871 - 9041932
Alignment:
| Q |
263 |
gaaaattgcttttctgacattcaaaacgtcatatttatacatggacctgacgtttgtacctc |
324 |
Q |
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| T |
9041871 |
gaaatttgcttttatgacattcaaaacgtcatattgatacatggaaatgacgtttttacctc |
9041932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 297
Target Start/End: Original strand, 53687701 - 53687735
Alignment:
| Q |
263 |
gaaaattgcttttctgacattcaaaacgtcatatt |
297 |
Q |
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| T |
53687701 |
gaaaattacttttctgacattcaaaacgtcatatt |
53687735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 325
Target Start/End: Complemental strand, 4997227 - 4997165
Alignment:
| Q |
263 |
gaaaattgcttttctgacattcaaaacgtcatatttatacatggacctgacgtttgtacctcc |
325 |
Q |
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| T |
4997227 |
gaaaattgcttttttgacattcaaaacttcatattgacacatggaaatgacgtttttacctcc |
4997165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 267 - 297
Target Start/End: Original strand, 4996420 - 4996450
Alignment:
| Q |
267 |
attgcttttctgacattcaaaacgtcatatt |
297 |
Q |
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| T |
4996420 |
attgcttttctgacattcaaaacgtcatatt |
4996450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 263 - 357
Target Start/End: Original strand, 31868333 - 31868429
Alignment:
| Q |
263 |
gaaaattgcttttctgacattcaaaacgtcatatttatacatggacctgacgtttgtacctccaacggta--attagatttatccgtcggtagttaa |
357 |
Q |
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| T |
31868333 |
gaaaattgcttttttgatattcaaaacgtcatgttgacacatgaaaatgacgtttttacccccaacggtaccactagattgatccggcggtagttaa |
31868429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 327
Target Start/End: Original strand, 38052580 - 38052644
Alignment:
| Q |
263 |
gaaaattgcttttctgacattcaaaacgtcatatttatacatggacctgacgtttgtacctccaa |
327 |
Q |
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| T |
38052580 |
gaaaattgcttttctgacattgaaaacgtcatattaacatatggaaatgacatttttacctccaa |
38052644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 267 - 322
Target Start/End: Complemental strand, 1634993 - 1634938
Alignment:
| Q |
267 |
attgcttttctgacattcaaaacgtcatatttatacatggacctgacgtttgtacc |
322 |
Q |
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| T |
1634993 |
attgcttttctgacattcaaaacgttatattgacacatggaaatgacgtttttacc |
1634938 |
T |
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