View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20262_low_78 (Length: 356)
Name: NF20262_low_78
Description: NF20262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20262_low_78 |
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Alignment Details
Target: chr2 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 40870689 - 40870351
Alignment:
| Q |
1 |
ctcaaattatattaagtaggaacacgtgtgcgacaaggtacttcatcgagagtttagaacgcaattaacaaatttagaatcatatttggctcatctaaaa |
100 |
Q |
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| T |
40870689 |
ctcaaattatattaagtaggaacacgtgtgcgacaaggtacttcatcaagagtttagaacgcaattaacaaatttagaatcatatttggctcatctaaaa |
40870590 |
T |
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| Q |
101 |
ttgagaagagtaatatatagtgcaaagatgaaagaaattaatattgtaacaaaatttatgtacacatgcgacaaattatgaaatgcttgaaatttcaaga |
200 |
Q |
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| T |
40870589 |
ttgagaagagtaatacatagtgcaaagatgaaagaaattaatattgtaacaaaatttatgtacacatgcgacaaattatgaaatgcttgaaatttcaaga |
40870490 |
T |
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| Q |
201 |
gttatttttcgagttaatgattatgtatatatgtcccttcacttaggtgaacttggtagatgatttgagacatttgatttcatatacctgtggtagagtc |
300 |
Q |
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| T |
40870489 |
gttatttttcgagttaatgattatgtatatatgtcccttcacttaggtgaacttggtagatgatttgagacatttgatttcatatacctgtggtagagtc |
40870390 |
T |
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| Q |
301 |
aagccagattgataatgatccatggtctagtttctgatg |
339 |
Q |
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| T |
40870389 |
aagccagattgataatgatccatggtctagtttctgatg |
40870351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 265 - 316
Target Start/End: Original strand, 43100111 - 43100162
Alignment:
| Q |
265 |
ttgagacatttgatttcatatacctgtggtagagtcaagccagattgataat |
316 |
Q |
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| T |
43100111 |
ttgagacatttgatttcatatacctgatgtagagtcgagccagattgttaat |
43100162 |
T |
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