View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20262_low_79 (Length: 351)

Name: NF20262_low_79
Description: NF20262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20262_low_79
NF20262_low_79
[»] chr1 (3 HSPs)
chr1 (101-340)||(1718061-1718300)
chr1 (1-103)||(1718331-1718433)
chr1 (237-283)||(38483819-38483865)
[»] chr3 (13 HSPs)
chr3 (230-334)||(26647851-26647955)
chr3 (233-328)||(26654001-26654096)
chr3 (230-304)||(20033501-20033575)
chr3 (231-307)||(19951998-19952074)
chr3 (237-328)||(20015375-20015466)
chr3 (238-340)||(20007447-20007549)
chr3 (252-306)||(19849871-19849925)
chr3 (230-288)||(20006421-20006479)
chr3 (230-307)||(20035770-20035847)
chr3 (101-228)||(26648113-26648243)
chr3 (238-307)||(19813157-19813226)
chr3 (230-294)||(19956971-19957035)
chr3 (103-159)||(19952284-19952340)
[»] chr5 (3 HSPs)
chr5 (230-314)||(26354094-26354178)
chr5 (237-307)||(9815908-9815978)
chr5 (238-288)||(27472660-27472710)
[»] chr8 (1 HSPs)
chr8 (230-304)||(22685507-22685581)
[»] chr7 (2 HSPs)
chr7 (242-306)||(12582137-12582201)
chr7 (242-306)||(12521888-12521952)
[»] scaffold0038 (1 HSPs)
scaffold0038 (239-278)||(19562-19601)
[»] chr6 (1 HSPs)
chr6 (239-278)||(28219064-28219103)


Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 101 - 340
Target Start/End: Complemental strand, 1718300 - 1718061
Alignment:
Q  101 ttgaaagttcgatgttatcttttgaaattgacctcttcagtggtaatatctttttataaccagctaaagatgacgaacattggttatttaaatgcttaga 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  1718300 ttgaaagttcgatgttatcttttgaaattgacctcttcagtggtaatatcttttcataaccagctaaagatgacgaacattggttatttaaatgcttaga 1718201  T
Q  201 ttcatggattatgccaccacatttgtacctaagagtgtcaacaagattgggaggaaatccaggtggaacaccaacatcattaccacttttgttagctttt 300  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1718200 ttcatggattatgccaccacacttgtacctaagagtgtcaacaagattgggaggaaatccaggtggaacaccaacatcattaccacttttgttagctttt 1718101  T
Q  301 cctacatcagctctaggtttcgttgaacatgcacgtctct 340  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  1718100 cctacatcagctctaggtttcgttgaacatgcacatctct 1718061  T

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Target: chr1; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 1718433 - 1718331
Alignment:
Q  1 gagtgaaactgagaatattgctgcgcagcagttacattgttgttcggagcaacnnnnnnnctgatagaaaagtttttgcatcttgcttcttctctcccat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||       ||||||||||||||||||||||||||||||||||||||||    
T  1718433 gagtgaaactgagaatattgctgcgcagcagttacattgttgttcggagtaactttttttctgatagaaaagtttttgcatcttgcttcttctctcccat 1718334  T
Q  101 ttg 103  Q
    |||    
T  1718333 ttg 1718331  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 237 - 283
Target Start/End: Complemental strand, 38483865 - 38483819
Alignment:
Q  237 gtcaacaagattgggaggaaatccaggtggaacaccaacatcattac 283  Q
    |||||||||||  ||||||||| ||||||||||||||||||||||||    
T  38483865 gtcaacaagatctggaggaaattcaggtggaacaccaacatcattac 38483819  T

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Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 230 - 334
Target Start/End: Complemental strand, 26647955 - 26647851
Alignment:
Q  230 taagagtgtcaacaagattgggaggaaatccaggtggaacaccaacatcattaccacttttgttagcttttcctacatcagctctaggtttcgttgaaca 329  Q
    |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||| |||||||||||  | ||||| ||||| ||||||     
T  26647955 taagagtgtcaacaagattgggaggaaaaccagggggaacaccaacatcattaccacttatgttatcttttcctacacaaactctatgtttccttgaact 26647856  T
Q  330 tgcac 334  Q
    |||||    
T  26647855 tgcac 26647851  T

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Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 233 - 328
Target Start/End: Complemental strand, 26654096 - 26654001
Alignment:
Q  233 gagtgtcaacaagattgggaggaaatccaggtggaacaccaacatcattaccacttttgttagcttttcctacatcagctctaggtttcgttgaac 328  Q
    ||||||||||||||||||||||||||||||||||||||| || |||   |||||||||| ||||||| ||||||| ||||||||||||| ||||||    
T  26654096 gagtgtcaacaagattgggaggaaatccaggtggaacactaaaatcgacaccacttttgctagctttccctacatgagctctaggtttccttgaac 26654001  T

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Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 230 - 304
Target Start/End: Original strand, 20033501 - 20033575
Alignment:
Q  230 taagagtgtcaacaagattgggaggaaatccaggtggaacaccaacatcattaccacttttgttagcttttccta 304  Q
    |||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||| |||||| |||||||    
T  20033501 taagagtgtcaacaagattgggaggaaatccaggtgcaacaccatcatcattactactttcgttagcatttccta 20033575  T

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Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 231 - 307
Target Start/End: Complemental strand, 19952074 - 19951998
Alignment:
Q  231 aagagtgtcaacaagattgggaggaaatccaggtggaacaccaacatcattaccacttttgttagcttttcctacat 307  Q
    |||||| ||||||  ||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  19952074 aagagtttcaacacaattggtaggaaatccaggtggaacaccaacaacattaccacttatgttagcttttcctacat 19951998  T

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Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 237 - 328
Target Start/End: Original strand, 20015375 - 20015466
Alignment:
Q  237 gtcaacaagattgggaggaaatccaggtggaacaccaacatcattaccacttttgttagcttttcctacatcagctctaggtttcgttgaac 328  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||  ||| |||||| |||||||| || || |||| ||||| ||||||    
T  20015375 gtcaacaagattgggacaaaatccaggtggaacaccaacatcattactgcttctgttagtttttcctagatgaggtctatgtttccttgaac 20015466  T

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Target: chr3; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 238 - 340
Target Start/End: Original strand, 20007447 - 20007549
Alignment:
Q  238 tcaacaagattgggaggaaatccaggtggaacaccaacatcattaccacttttgttagcttttcctacatcagctctaggtttcgttgaacatgcacgtc 337  Q
    |||||||||||||||||||||||||||||||||||||||||| | | |||| |||||| || |||||||| || |||| || || |||||  ||||| ||    
T  20007447 tcaacaagattgggaggaaatccaggtggaacaccaacatcaatccaacttctgttagattgtcctacatgagatctatgtctccttgaaattgcacttc 20007546  T
Q  338 tct 340  Q
    |||    
T  20007547 tct 20007549  T

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Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 252 - 306
Target Start/End: Complemental strand, 19849925 - 19849871
Alignment:
Q  252 aggaaatccaggtggaacaccaacatcattaccacttttgttagcttttcctaca 306  Q
    |||||||||| |||||| ||||||||||||||||||| |||||||||||||||||    
T  19849925 aggaaatccaagtggaaaaccaacatcattaccacttctgttagcttttcctaca 19849871  T

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Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 230 - 288
Target Start/End: Original strand, 20006421 - 20006479
Alignment:
Q  230 taagagtgtcaacaagattgggaggaaatccaggtggaacaccaacatcattaccactt 288  Q
    |||||||| |||||||||||||||||||||||  |||||||||||||||| ||||||||    
T  20006421 taagagtgccaacaagattgggaggaaatccatctggaacaccaacatcaataccactt 20006479  T

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Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 230 - 307
Target Start/End: Original strand, 20035770 - 20035847
Alignment:
Q  230 taagagtgtcaacaagattgggaggaaatccaggtggaacaccaacatcattaccacttttgttagcttttcctacat 307  Q
    ||||||| |||||||||||||||| |||||||||  |||||| ||| ||| |||||||||||||   |||||||||||    
T  20035770 taagagtatcaacaagattgggagaaaatccaggctgaacacaaacttcaataccacttttgtttaattttcctacat 20035847  T

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Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 101 - 228
Target Start/End: Complemental strand, 26648243 - 26648113
Alignment:
Q  101 ttgaaagttcgatgttatcttttgaaattgacctcttcagtggtaatatctttttataaccagctaaagatgacgaaca---ttggttatttaaatgctt 197  Q
    |||||||||| |||||||||  ||||| || ||| ||||||||||||||||||| ||||   ||| |||| |  |||||   |||||    |||||||||    
T  26648243 ttgaaagttcaatgttatctactgaaactggccttttcagtggtaatatcttttcataatatgctgaagaggctgaacaactttggtccaataaatgctt 26648144  T
Q  198 agattcatggattatgccaccacatttgtac 228  Q
    ||||||||||||| |||||||||| ||||||    
T  26648143 agattcatggattttgccaccacacttgtac 26648113  T

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Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 238 - 307
Target Start/End: Complemental strand, 19813226 - 19813157
Alignment:
Q  238 tcaacaagattgggaggaaatccaggtggaacaccaacatcattaccacttttgttagcttttcctacat 307  Q
    ||||||||||||||||||||| ||||||||||| || || || |||||||| ||| |  |||||||||||    
T  19813226 tcaacaagattgggaggaaattcaggtggaacagcagcaccaataccacttctgtcaaattttcctacat 19813157  T

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Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 294
Target Start/End: Complemental strand, 19957035 - 19956971
Alignment:
Q  230 taagagtgtcaacaagattgggaggaaatccaggtggaacaccaacatcattaccacttttgtta 294  Q
    ||||||| |||||||||||||||| |||||||||| |||||| ||| ||  |||||||| |||||    
T  19957035 taagagtatcaacaagattgggagaaaatccaggttgaacacaaacctccataccacttctgtta 19956971  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 103 - 159
Target Start/End: Complemental strand, 19952340 - 19952284
Alignment:
Q  103 gaaagttcgatgttatcttttgaaattgacctcttcagtggtaatatctttttataa 159  Q
    |||||||| ||| ||||||| |||| || ||| ||||||||||||||||||| ||||    
T  19952340 gaaagttcaatgctatctttcgaaactggccttttcagtggtaatatcttttcataa 19952284  T

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Target: chr5 (Bit Score: 57; Significance: 9e-24; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 230 - 314
Target Start/End: Original strand, 26354094 - 26354178
Alignment:
Q  230 taagagtgtcaacaagattgggaggaaatccaggtggaacaccaacatcattaccacttttgttagcttttcctacatcagctct 314  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||  |||| |||||| |||||| |||| ||||||    
T  26354094 taagaatgtcaacaagattgggaggaaatccaggtggaacaccaacatcattaatacttctgttagtttttccaacatgagctct 26354178  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 237 - 307
Target Start/End: Complemental strand, 9815978 - 9815908
Alignment:
Q  237 gtcaacaagattgggaggaaatccaggtggaacaccaacatcattaccacttttgttagcttttcctacat 307  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||| |||| ||| |  |||||||||||    
T  9815978 gtcaacaagattgggaggaaattcaggtggaaaaccaacatcattacaacttctgtcaatttttcctacat 9815908  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 288
Target Start/End: Complemental strand, 27472710 - 27472660
Alignment:
Q  238 tcaacaagattgggaggaaatccaggtggaacaccaacatcattaccactt 288  Q
    ||||||| ||||  ||| |||||| ||||||||||||||||||||||||||    
T  27472710 tcaacaacattgaaagggaatccaagtggaacaccaacatcattaccactt 27472660  T

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Target: chr8 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 230 - 304
Target Start/End: Original strand, 22685507 - 22685581
Alignment:
Q  230 taagagtgtcaacaagattgggaggaaatccaggtggaacaccaacatcattaccacttttgttagcttttccta 304  Q
    |||| |||| ||||||||||  || |||||||||||||||||||||||||||||||||| |||||||| ||||||    
T  22685507 taagtgtgttaacaagattgaaagaaaatccaggtggaacaccaacatcattaccacttctgttagctattccta 22685581  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 306
Target Start/End: Complemental strand, 12582201 - 12582137
Alignment:
Q  242 caagattgggaggaaatccaggtggaacaccaacatcattaccacttttgttagcttttcctaca 306  Q
    ||||||||||| |||||| |||  || ||||||||| | |||| |||||||||||||||||||||    
T  12582201 caagattgggacgaaatctaggctgaccaccaacatgaataccgcttttgttagcttttcctaca 12582137  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 242 - 306
Target Start/End: Complemental strand, 12521952 - 12521888
Alignment:
Q  242 caagattgggaggaaatccaggtggaacaccaacatcattaccacttttgttagcttttcctaca 306  Q
    |||||||| || |||||| |||  || ||||||||| | |||| |||||||||||||||||||||    
T  12521952 caagattgagacgaaatctaggctgaccaccaacatgaataccgcttttgttagcttttcctaca 12521888  T

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Target: scaffold0038 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 239 - 278
Target Start/End: Original strand, 19562 - 19601
Alignment:
Q  239 caacaagattgggaggaaatccaggtggaacaccaacatc 278  Q
    |||||||| ||||||||||||||||| |||||||||||||    
T  19562 caacaagaatgggaggaaatccaggtagaacaccaacatc 19601  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 239 - 278
Target Start/End: Original strand, 28219064 - 28219103
Alignment:
Q  239 caacaagattgggaggaaatccaggtggaacaccaacatc 278  Q
    |||||||| ||||||||||||||||| |||||||||||||    
T  28219064 caacaagaatgggaggaaatccaggtagaacaccaacatc 28219103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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