View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20262_low_80 (Length: 348)
Name: NF20262_low_80
Description: NF20262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20262_low_80 |
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Alignment Details
Target: chr8 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 330
Target Start/End: Original strand, 39726370 - 39726699
Alignment:
| Q |
1 |
aggtgaagaagagaacaaacccaataagcagcagtgaaaccagcaatcccagaagaaagatgaataacataaccaccagaataatccataacaccccatt |
100 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39726370 |
aggtgaagaagagaacaaacccaataagcagcggtgaaaccagcaatcccagaagaaagatgaataacataaccaccagaataatccataacaccccatt |
39726469 |
T |
|
| Q |
101 |
gaaacaagaaaccaccaccccacaaactaaaagcaccaatagtataagaaaaagttaaccaaagtggcacaaacatcatccaagccttaaaattcatcct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39726470 |
gaaacaagaaaccaccaccccacaaactaaaagcaccaatagtataagaaaaagttaaccaaagtggcacaaacatcatccaagccttaaaattcatcct |
39726569 |
T |
|
| Q |
201 |
agccaaaacagaaccagccaatataacaagtgaaatagcagcaaaaacacactgaaaccaaaccatagtagccattggataaaatggttcaatctcagca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39726570 |
agccaaaacagaaccagccaatataacaagtgaaatagcagcaaaaacacactgaaaccaaaccatagtagccattggataaaatggttcaatctcagca |
39726669 |
T |
|
| Q |
301 |
gtctccaaactaccgtcatgatgataatgc |
330 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
39726670 |
gtctccaaactaccgtcatgatgataatgc |
39726699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 31606235 - 31606189
Alignment:
| Q |
19 |
acccaataagcagcagtgaaaccagcaatcccagaagaaagatgaat |
65 |
Q |
| |
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||||||||||||||||||||||| |||| |||||||| |||||||| |
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| T |
31606235 |
acccaataagcagcagtgaaacctgcaacaccagaagatagatgaat |
31606189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 96; Significance: 5e-47; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 19 - 221
Target Start/End: Original strand, 25670924 - 25671126
Alignment:
| Q |
19 |
acccaataagcagcagtgaaaccagcaatcccagaagaaagatgaataacataaccaccagaataatccataacaccccattgaaacaagaaa-ccacca |
117 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||||| ||| | |||||| |||||| |
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|
| T |
25670924 |
acccaataagcagcagtgaaaccagcaattccagaagaaagatgaataacataaccaccagaataatcaatcacaccccaatgata-aagaaatccacca |
25671022 |
T |
|
| Q |
118 |
ccccacaaactaaaagcaccaatagtataagaaaaagttaaccaaagtggcacaaacatcatccaagccttaaaattcatcctagccaaaacagaaccag |
217 |
Q |
| |
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||||| | |||||||||||||| ||||||||||||| | | |||||| || ||||| ||||||||| |||| |||||| || | | ||||||||||| |
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| T |
25671023 |
ccccaaagactaaaagcaccaacagtataagaaaaaataagccaaagaggaacaaaagccatccaagctttaatattcattcttccaagaacagaaccag |
25671122 |
T |
|
| Q |
218 |
ccaa |
221 |
Q |
| |
|
|||| |
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|
| T |
25671123 |
ccaa |
25671126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 92
Target Start/End: Complemental strand, 47501734 - 47501661
Alignment:
| Q |
19 |
acccaataagcagcagtgaaaccagcaatcccagaagaaagatgaataacataaccaccagaataatccataac |
92 |
Q |
| |
|
||||||||||||||||| |||||||||| |||| ||| || ||||||||||| || |||| | |||| ||||| |
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|
| T |
47501734 |
acccaataagcagcagtaaaaccagcaacaccagcagagaggtgaataacatatcccccagcaaaatcaataac |
47501661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 19 - 186
Target Start/End: Original strand, 5625135 - 5625302
Alignment:
| Q |
19 |
acccaataagcagcagtgaaaccagcaatcccagaagaaagatgaataacataaccaccagaataatccataacaccccattgaaacaagaaaccaccac |
118 |
Q |
| |
|
||||||||||| |||||||| ||| |||| ||||||||||||||||||||||| |||||||| |||| || |||||||| ||| |||| || ||||||| |
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|
| T |
5625135 |
acccaataagctgcagtgaatccaccaattccagaagaaagatgaataacatagccaccagagaaatcaatgacaccccaatgatacaaaaatccaccac |
5625234 |
T |
|
| Q |
119 |
cccacaaactaaaagcaccaatagtataagaaaaagttaaccaaagtggcacaaacatcatccaagcc |
186 |
Q |
| |
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|||| | |||||||||||||| ||| ||||| ||| | | |||||| || ||||| |||||||||| |
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|
| T |
5625235 |
cccatatactaaaagcaccaacagtgtaagagaaaatgagccaaagaggtacaaaagccatccaagcc |
5625302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 13349846 - 13349918
Alignment:
| Q |
19 |
acccaataagcagcagtgaaaccagcaatcccagaagaaagatgaataacataaccaccagaataatccataa |
91 |
Q |
| |
|
||||||||||||||||| || ||||||| ||||||||| | |||||| |||||||||||||| ||||| |||| |
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| T |
13349846 |
acccaataagcagcagtaaacccagcaaccccagaagacaaatgaatgacataaccaccagagtaatcgataa |
13349918 |
T |
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