View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20262_low_81 (Length: 348)
Name: NF20262_low_81
Description: NF20262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20262_low_81 |
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Alignment Details
Target: chr1 (Bit Score: 279; Significance: 1e-156; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 8 - 330
Target Start/End: Original strand, 32126307 - 32126629
Alignment:
| Q |
8 |
agattattctccaattgataccctccaatcacaatagaagtccttaggttcagaccaccgttaacaaatccaagacacaaaacctcatcatttatattca |
107 |
Q |
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| T |
32126307 |
agattattctccaactgataccctccaatcacaatagaagtccttaggttcacaccaccgttaacaaatccaagacacaaaacctcatcatttatattca |
32126406 |
T |
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| Q |
108 |
ccatcgaatttgcaccaaacatgctccaaatcacattgttctgtgaagcaagctcaatcgtaggcacagatgcacccaatggcgtccctggcaaattgtc |
207 |
Q |
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| T |
32126407 |
ccatcgaatttgcaccaaacatgctccaaatcacattgttctgtaaaagaagctcaattgtaggcacagacgcacccaatggcgtccctggcaaattgtc |
32126506 |
T |
|
| Q |
208 |
aaaactataacaaaattcaaaaggcggagatgaatcctctatcgatatgtttcttgcaacagatgctttcacaaaagcgtctgtaactgctttgtaaata |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32126507 |
aaaactataacaaaattcaaaaggcggagatgaatcctctgttgttatgtttcttgcaacagatgctttcacaaaagcgtctgtaactgctttgtaaata |
32126606 |
T |
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| Q |
308 |
gaagcttctagaaccatgtaagg |
330 |
Q |
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| T |
32126607 |
gaagcttctagaaccgtgtaagg |
32126629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 8 - 330
Target Start/End: Original strand, 32138111 - 32138430
Alignment:
| Q |
8 |
agattattctccaattgataccctccaatcacaatagaagtccttaggttcagaccaccgttaacaaatccaagacacaaaacctcatcatttatattca |
107 |
Q |
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|||||||||||||| |||||||||||||||||||| ||||||||| ||| |||||| || |||||||||||||||||||| |||||||||||| ||| |
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| T |
32138111 |
agattattctccaactgataccctccaatcacaattgaagtccttgtattcttaccaccattcacaaatccaagacacaaaacttcatcatttatactca |
32138210 |
T |
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| Q |
108 |
ccatcgaatttgcaccaaacatgctccaaatcacatt---gttctgtgaagcaagctcaatcgtaggcacagatgcacccaatggcgtccctggcaaatt |
204 |
Q |
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| T |
32138211 |
ccattgaatttgcaccaaatatcctccaaaccacattttcattttgcaaaaagagctcaatagtaggcacagctgcacccaatcgtgtcccagtcaaatt |
32138310 |
T |
|
| Q |
205 |
gtcaaaactataacaaaattcaaaaggcggagatgaatcctctatcgatatgtttcttgcaacagatgctttcacaaaagcgtctgtaactgctttgtaa |
304 |
Q |
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| T |
32138311 |
------agtgtaacaaaattcaaaaggcgcaaccgaacccaccctctttatgtttcttgcagcagacgctttcacgaaagcgtctgtaactgctttgtaa |
32138404 |
T |
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| Q |
305 |
atagaagcttctagaaccatgtaagg |
330 |
Q |
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| T |
32138405 |
atagaagcttctaaaaccgtgtaagg |
32138430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 8 - 315
Target Start/End: Original strand, 32147504 - 32147805
Alignment:
| Q |
8 |
agattattctccaattgataccctccaatcacaatagaagtccttaggttcagaccaccgttaacaaatccaagacacaaaacctcatcatttatattca |
107 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |||| || | ||| |||||| | ||||| ||||||||||||||||||||||||||||||| |
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| T |
32147504 |
agattattctccaactgataccctccaatcacaattgaagcccatgtattctcaccaccaatcacaaaaccaagacacaaaacctcatcatttatattca |
32147603 |
T |
|
| Q |
108 |
ccatcgaatttgcaccaaacatgctccaaatcacattgttctgtgaagcaagctcaatcgtaggcacagatgcacccaatggcgtccctggcaaattgtc |
207 |
Q |
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|||| |||||||||||||| || |||||||||||||||||||| || ||||||||| ||||| ||| ||||||||| | ||||| | || ||| |
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| T |
32147604 |
ccattgaatttgcaccaaatatcctccaaatcacattgttctgcaaataaagctcaatagtaggtacatccgcacccaatcgtgtcccagtcacatt--- |
32147700 |
T |
|
| Q |
208 |
aaaactataacaaaattcaaaaggcggagatgaatcctctatcgatatgtttcttgcaacagatgctttcacaaaagcgtctgtaactgctttgtaaata |
307 |
Q |
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| | |||||||| |||||||| | | |||||| | | ||||||||||||| |||| |||||||| ||||||||||||||||||||||||||| |
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| T |
32147701 |
---agtgtaacaaaactcaaaaggtgcaaccgaatccaccctttttatgtttcttgcagcagacgctttcacgaaagcgtctgtaactgctttgtaaata |
32147797 |
T |
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| Q |
308 |
gaagcttc |
315 |
Q |
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|||||||| |
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| T |
32147798 |
gaagcttc |
32147805 |
T |
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