View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20262_low_88 (Length: 323)
Name: NF20262_low_88
Description: NF20262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20262_low_88 |
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Alignment Details
Target: chr4 (Bit Score: 156; Significance: 7e-83; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 109 - 288
Target Start/End: Complemental strand, 26008787 - 26008608
Alignment:
| Q |
109 |
aaaaggaggatatgttttgtcaaagtggatactcgcctaagtttcacattgagtagtggaaataaataagagatagagatatattaaaaatacggaaatt |
208 |
Q |
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| T |
26008787 |
aaaaggaggatatgttttgtcaaagtggatactcacctaagttttacattgagtagtggaaataaataagagataaagagatattaaaaatacgaaaatt |
26008688 |
T |
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| Q |
209 |
tagtttaatttttcttcaccacaacaactttagtcgtttgggtgtattaagtgcttggataaatgtgtgtctttgatagg |
288 |
Q |
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| T |
26008687 |
tagtttaatttttcttcaccacaacaactttagtcgtttgggtgtattaagtgcttggataaatgtatgtctttgatagg |
26008608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 26008930 - 26008805
Alignment:
| Q |
1 |
tgtgaagaaaaatcaagtgaaatgaaatatttagagtgaactgcaataaaaattttactttgcgctgatgaagtttataacaaagttaagaaatgtgaga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
26008930 |
tgtgaagaaaaatcaagtgaaatgaaatatttagagtgaactgcaataaaatttttactttgcgctgatgaagtttataacaaggttaagaaatgtgaga |
26008831 |
T |
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| Q |
101 |
cttcaaataaaaggaggatatgtttt |
126 |
Q |
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| T |
26008830 |
cttcaaatgaaaggaggatatgtttt |
26008805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 83 - 139
Target Start/End: Complemental strand, 39650320 - 39650264
Alignment:
| Q |
83 |
aagttaagaaatgtgagacttcaaataaaaggaggatatgttttgtcaaagtggata |
139 |
Q |
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| T |
39650320 |
aagtgaagatatgtgagactttaaatgaaaggaggatatgttatgtcaaagtggata |
39650264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 257
Target Start/End: Complemental strand, 37883125 - 37883076
Alignment:
| Q |
208 |
ttagtttaatttttcttcaccacaacaactttagtcgtttgggtgtatta |
257 |
Q |
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||||||||| ||||||||||||||||| || || || ||||||||||||| |
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| T |
37883125 |
ttagtttaagttttcttcaccacaacatctctaatcatttgggtgtatta |
37883076 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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