View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20262_low_9 (Length: 681)
Name: NF20262_low_9
Description: NF20262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20262_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 370; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 169 - 662
Target Start/End: Complemental strand, 28102945 - 28102454
Alignment:
| Q |
169 |
ggtgttgaatgcatcattaataagataaactttcttttttaagtttcttaacaagtgtttttaaaacatttattagcatttcgctaactaaattgatcaa |
268 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |
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| T |
28102945 |
ggtgttgaatgcatcattaataagataaattttcttttttaagtttcttaacaagtgtttttagaacatttattagcatttcgctaactaaattgacaaa |
28102846 |
T |
|
| Q |
269 |
ataaacacctttatcaaaaatggtttggggaaggaattgaagtgttt--aatagaagatacatccaaggaatgttttactttgtttttgtggctaactga |
366 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
28102845 |
ataaacacctttatcaaaaatggtttggggaaggaattgaagtgtttttaatagaagatacatccaaggaatgttttactttgtttttgtggctagctga |
28102746 |
T |
|
| Q |
367 |
agtggcaaacacattacagatttgaaatgagggtttagttgaaacatgttacatcatgtgcttatatagctatatacttaattaaataatcagattgttg |
466 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
28102745 |
agtggcaaacacattacacatttgaaatgagggtttagttgaaacatgttacctcatgtgcttatatagctatatacttagttaaataatcagattgttg |
28102646 |
T |
|
| Q |
467 |
aactcaagtgattaataatcgtcaattaataatgaattgtttgagaggataaaagtttgattgaatttttagtgagacaataagattgatcaaactttat |
566 |
Q |
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| T |
28102645 |
aactcaagtgattaataatcgtcgattaataatgaattgtttgagaggataaaagtttgattgaatttttagtgagacaataagattgatcaaac----- |
28102551 |
T |
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| Q |
567 |
ttttctcataagaatttgaag-nnnnnnnnngaaataaaataggtaactactatgaatatcttttannnnnnnatgcagtacaagtaaccttctcat |
662 |
Q |
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| T |
28102550 |
ttatctcataagaatttgaagaaaaaaaaaagaaataaaataggtaactactatgaatatcttttatttttttatgcagtacaagtaaccttctcat |
28102454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 28103112 - 28103013
Alignment:
| Q |
1 |
gagatgacatattttttattggtgatgtggcgcagtcatagatgtagaaatcaatgtattaacttaatgagttacactaagaagtgttcttatgacacta |
100 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||| | ||||||||| |
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| T |
28103112 |
gagatgacatattttt-attggtgatgtggcgcagtcatagatgtagaaatcaatctattaacttaatgagttgcaccaagaagtgttgtcatgacacta |
28103014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 225
Target Start/End: Complemental strand, 9596350 - 9596294
Alignment:
| Q |
169 |
ggtgttgaatgcatcattaataagataaactttcttttttaagtttcttaacaagtg |
225 |
Q |
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|||||||||| |||||| ||||||||||||||||||||||| ||||||||||||| |
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| T |
9596350 |
ggtgttgaatacatcatctctaagataaactttcttttttaagcttcttaacaagtg |
9596294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 200 - 241
Target Start/End: Original strand, 29110825 - 29110866
Alignment:
| Q |
200 |
ttcttttttaagtttcttaacaagtgtttttaaaacatttat |
241 |
Q |
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| T |
29110825 |
ttcttttttaaatttcttaacaagtgtttttaaagcatttat |
29110866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 169 - 225
Target Start/End: Complemental strand, 24093839 - 24093783
Alignment:
| Q |
169 |
ggtgttgaatgcatcattaataagataaactttcttttttaagtttcttaacaagtg |
225 |
Q |
| |
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|||||||||| ||||||| |||||||||||||| ||||||| ||||||||||||| |
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| T |
24093839 |
ggtgttgaatacatcattcccaagataaactttctcttttaagcttcttaacaagtg |
24093783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 189 - 222
Target Start/End: Original strand, 6963682 - 6963715
Alignment:
| Q |
189 |
taagataaactttcttttttaagtttcttaacaa |
222 |
Q |
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||||||||||||||| |||||||||||||||||| |
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| T |
6963682 |
taagataaactttctcttttaagtttcttaacaa |
6963715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 189 - 249
Target Start/End: Complemental strand, 12929032 - 12928972
Alignment:
| Q |
189 |
taagataaactttcttttttaagtttcttaacaagtgtttttaaaacatttattagcattt |
249 |
Q |
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||||||||||||| | ||| || ||||||||||||||||| | |||| |||||||||||| |
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| T |
12929032 |
taagataaactttatctttctagcttcttaacaagtgttttaagaacacttattagcattt |
12928972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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