View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20262_low_96 (Length: 296)
Name: NF20262_low_96
Description: NF20262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20262_low_96 |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-115; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 54572310 - 54572532
Alignment:
| Q |
18 |
ttctattcgtatatgtgcttgtgcttcataggtagttaattcactttttaagagtaaataattgcaattaagtgagtaagagccttatatactttgggat |
117 |
Q |
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| T |
54572310 |
ttctattcttatatgtgcttgtgcttcataggtagttaattcactttttaagagtaaataattgcaattaagtgagtaagagccttatatactttgggat |
54572409 |
T |
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| Q |
118 |
agaatttcattgcaaaatgcatagggtctccatgaatcattggttaggactgacaaatctatatcattgattttcattcctccatgaat-ccccattcac |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
54572410 |
agaatttcattgcaaaatgcatagggtctccatgaatcattggttaggactgacaaatctatatcattgattttcattcctccatgaatcccccattcac |
54572509 |
T |
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| Q |
217 |
actttctcagttatcaaaaatac |
239 |
Q |
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||||||||||||||||||||||| |
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| T |
54572510 |
actttctcagttatcaaaaatac |
54572532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 55155577 - 55155799
Alignment:
| Q |
18 |
ttctattcgtatatgtgcttgtgcttcataggtagttaattcactttttaagagtaaataattgcaattaagtgagtaagagccttatatactttgggat |
117 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55155577 |
ttctattcttatatgtgcttgtgcttcataggtagttaattcactttttaagagtaaataattgcaattaagtgagtaagagccttatatactttgggat |
55155676 |
T |
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| Q |
118 |
agaatttcattgcaaaatgcatagggtctccatgaatcattggttaggactgacaaatctatatcattgattttcattcctccatgaatcc-ccattcac |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
55155677 |
agaatttcattgcaaaatgcatagggtctccatgaatcattggttaggactgacaaatctatatcattgattttcattcctccatgaatcctccattcac |
55155776 |
T |
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| Q |
217 |
actttctcagttatcaaaaatac |
239 |
Q |
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||||||||||||||||||||||| |
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| T |
55155777 |
actttctcagttatcaaaaatac |
55155799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 152 - 238
Target Start/End: Original strand, 4097269 - 4097355
Alignment:
| Q |
152 |
aatcattggttaggactgacaaatctatatcattgattttcattcctccatgaatccccattcacactttctcagttatcaaaaata |
238 |
Q |
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|||||||| |||||||||| ||||||| |||||||||||| ||||||| | |||||||||||||| |||||| |||||||||||||| |
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| T |
4097269 |
aatcattgattaggactgagaaatctaaatcattgattttgattcctcaaagaatccccattcacgctttctgagttatcaaaaata |
4097355 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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