View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20262_low_99 (Length: 290)
Name: NF20262_low_99
Description: NF20262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20262_low_99 |
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Alignment Details
Target: chr1 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 21428734 - 21429015
Alignment:
| Q |
1 |
tataacaacatgaaaaaatgtaaaaacctaccaccaaacaacaaggtattcatgcaaaacatacctcaactttcttcatccatgaattagctttctgaac |
100 |
Q |
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| T |
21428734 |
tataacaacatgaaaaaatgtaaaaacctaccaccaaacaacaaggtattcatgcaaaacatacctcaactttcatcatccatgaattagctttctgaac |
21428833 |
T |
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| Q |
101 |
ttgctcattctcccaaccattgataacagcatcttcccttttaaacctgttattaaccttagcaaccttagcgttttgccatgcagctatcttggactca |
200 |
Q |
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| T |
21428834 |
ctgctcattctcccaaccattgataacagcatcttcccttttaaacctgttattaaccttagcaaccttagcgttttgccatgcagctatcttggactca |
21428933 |
T |
|
| Q |
201 |
acctcttctttcttcaccctctgaactgacacttcactctgatgatgaccattgatggtgcttgaagatgatggtgatgatg |
282 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |
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| T |
21428934 |
acctcttctttcttcaccctctgaactgacacttcactctgatgatgaccattgatggtgcttgaagaagatgatgatgatg |
21429015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 62 - 220
Target Start/End: Original strand, 36402685 - 36402843
Alignment:
| Q |
62 |
tacctcaactttcttcatccatgaattagctttctgaacttgctcattctcccaaccattgataacagcatcttcccttttaaacctgttattaacctta |
161 |
Q |
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|||||||||||| |||||||||||| ||||||||||||| || ||| ||||||| |||||||| |||||||| || || || ||||||||||||| |||| |
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| T |
36402685 |
tacctcaacttttttcatccatgaagtagctttctgaacctgttcactctcccagccattgatgacagcatcatctctcttgaacctgttattaatctta |
36402784 |
T |
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| Q |
162 |
gcaaccttagcgttttgccatgcagctatcttggactcaacctcttctttcttcaccct |
220 |
Q |
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||||| ||||| || ||||| || | |||||| | ||||| || || ||||||||||| |
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| T |
36402785 |
gcaactttagcattctgccaagctgatatctttgcatcaacttcctccttcttcaccct |
36402843 |
T |
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