View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20263_high_4 (Length: 268)
Name: NF20263_high_4
Description: NF20263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20263_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 129; Significance: 8e-67; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 16 - 250
Target Start/End: Complemental strand, 17775662 - 17775432
Alignment:
| Q |
16 |
tcttcaccgagtagaacagtaataaactcgtgaattttgacttatttgataaaaaataagaattaaatatatatttttctgtatgaagtgaagaagtttt |
115 |
Q |
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| T |
17775662 |
tcttcaccgagtagaacagtaataaactcgtgaattttgacttatttgataaaaaataagaattaaatatatatttttctgtatgaagtgaataagtttt |
17775563 |
T |
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| Q |
116 |
gattttagttc-tnnnnnnntatttgtatgaatgcactttttaattcatcttatttttataaagatttgg----atgcccgatactatgagtggaaatag |
210 |
Q |
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| T |
17775562 |
gattttagttcttaaaaaaatatttgtatgaatgcac--tttaattcatc-------tataaagatttggctccatgcccggtattacgagtggaaatag |
17775472 |
T |
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| Q |
211 |
gctttgcacggtctaagtttcacctgtcaaaaaatttaag |
250 |
Q |
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| T |
17775471 |
gttttgcaaggtctaagtttgacctgtcaaaaaatttaag |
17775432 |
T |
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