View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20263_low_5 (Length: 249)

Name: NF20263_low_5
Description: NF20263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20263_low_5
NF20263_low_5
[»] chr8 (3 HSPs)
chr8 (13-249)||(1775740-1775979)
chr8 (152-249)||(42308848-42308943)
chr8 (22-50)||(42308755-42308783)
[»] chr5 (2 HSPs)
chr5 (115-249)||(4081749-4081878)
chr5 (20-56)||(4081920-4081956)
[»] chr2 (3 HSPs)
chr2 (141-249)||(32315293-32315399)
chr2 (115-249)||(4844805-4844933)
chr2 (143-202)||(32315218-32315277)
[»] chr1 (2 HSPs)
chr1 (152-237)||(19790325-19790408)
chr1 (156-249)||(41324273-41324363)
[»] chr7 (1 HSPs)
chr7 (115-180)||(39742800-39742861)


Alignment Details
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 13 - 249
Target Start/End: Original strand, 1775740 - 1775979
Alignment:
Q  13 atacttgatatatatagacacaccgcaactcacatgaatgaattattctgctgtttcatgcaccaaacataaactcgatagacaataaatcaattgcatt 112  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  1775740 atacttgatatatagagacacaccgcaactcacatgaatgaattattctgctgtttcatgcaccaaacataaactcgatagaatataaatcaattgcatt 1775839  T
Q  113 actgcatataactttacttc---tttttctctctctctaagcatgaaaagtgatgagcatattttgtttggaacataaattaattagtatacatacataa 209  Q
     |||||||||||||| ||||   ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  1775840 tctgcatataactttgcttcttttttttctttctctctaagcatgaaaagtgatgagcatattttgtttggaacataaattaattagtattaatacataa 1775939  T
Q  210 ataatcctaaatcatatcagctcaatagcaagagtttaac 249  Q
    || |||||||||||||||||||||||||||||||||||||    
T  1775940 atgatcctaaatcatatcagctcaatagcaagagtttaac 1775979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 152 - 249
Target Start/End: Original strand, 42308848 - 42308943
Alignment:
Q  152 atgaaaagtgatgagcatattttgtttggaacataaattaattagtatacatacataaataatcctaaatcatatcagctcaatagcaagagtttaac 249  Q
    |||||||||||||| |||  ||| |||||||||||| | ||||||||||||  ||||||| ||||||||||||||||| ||||||| |||||||||||    
T  42308848 atgaaaagtgatgatcattctttatttggaacataagtgaattagtataca--cataaattatcctaaatcatatcagttcaatagtaagagtttaac 42308943  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 50
Target Start/End: Original strand, 42308755 - 42308783
Alignment:
Q  22 atatatagacacaccgcaactcacatgaa 50  Q
    |||||||||||||||||||||||||||||    
T  42308755 atatatagacacaccgcaactcacatgaa 42308783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 115 - 249
Target Start/End: Complemental strand, 4081878 - 4081749
Alignment:
Q  115 tgcatataactttacttctttttctctctctctaagcatgaaaagtgatgagcatattttgtttggaacataaattaattagtatacatacataaataat 214  Q
    ||||||||||||||| | |||||   |||||||||| ||||||||||||||||||  ||| |||||||| ||| | ||||||||||||  ||||||| |     
T  4081878 tgcatataactttacattttttt---tctctctaagtatgaaaagtgatgagcattctttatttggaacgtaagtgaattagtataca--cataaatgaa 4081784  T
Q  215 cctaaatcatatcagctcaatagcaagagtttaac 249  Q
    |||||||||||||||||||||||||||||||||||    
T  4081783 cctaaatcatatcagctcaatagcaagagtttaac 4081749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 56
Target Start/End: Complemental strand, 4081956 - 4081920
Alignment:
Q  20 atatatatagacacaccgcaactcacatgaatgaatt 56  Q
    |||||||||||||||||| |||||||||| |||||||    
T  4081956 atatatatagacacaccgtaactcacatgtatgaatt 4081920  T

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Target: chr2 (Bit Score: 66; Significance: 3e-29; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 141 - 249
Target Start/End: Original strand, 32315293 - 32315399
Alignment:
Q  141 tctctctaagcatgaaaagtgatgagcatattttgtttggaacataaattaattagtatacatacataaataatcctaaatcatatcagctcaatagcaa 240  Q
    ||||||| || ||||||||||||||||||  |||||||||||||||||| |||||||||||  |||||||| ||||||||||||||||||||||||  ||    
T  32315293 tctctctcagtatgaaaagtgatgagcattctttgtttggaacataaatgaattagtatac--acataaatgatcctaaatcatatcagctcaatactaa 32315390  T
Q  241 gagtttaac 249  Q
    |||||||||    
T  32315391 gagtttaac 32315399  T

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Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 115 - 249
Target Start/End: Original strand, 4844805 - 4844933
Alignment:
Q  115 tgcatataactttacttctttttctctctctctaagcatgaaaagtgatgagcatattttgtttggaacataaattaattagtatacatacataaataat 214  Q
    ||||||||||||||| | |||||||||||    ||| || |||| ||||||||||  |||||||||||| ||| | ||||||||||||  ||||||| |     
T  4844805 tgcatataactttacatttttttctctct----aagtataaaaaatgatgagcattctttgtttggaacgtaagtgaattagtataca--cataaatgaa 4844898  T
Q  215 cctaaatcatatcagctcaatagcaagagtttaac 249  Q
    |||||||||||||||||||||||||| ||||||||    
T  4844899 cctaaatcatatcagctcaatagcaaaagtttaac 4844933  T

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Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 143 - 202
Target Start/End: Original strand, 32315218 - 32315277
Alignment:
Q  143 tctctaagcatgaaaagtgatgagcatattttgtttggaacataaattaattagtataca 202  Q
    |||||||| ||||||||||||||||||  |||||||||||||||||| ||||||||||||    
T  32315218 tctctaagtatgaaaagtgatgagcattctttgtttggaacataaatgaattagtataca 32315277  T

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Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 152 - 237
Target Start/End: Complemental strand, 19790408 - 19790325
Alignment:
Q  152 atgaaaagtgatgagcatattttgtttggaacataaattaattagtatacatacataaataatcctaaatcatatcagctcaatag 237  Q
    ||||||||||||||||||  ||||||||||||| |||| |||||||||||  |||||||| ||||||||||||||||| |||||||    
T  19790408 atgaaaagtgatgagcattctttgtttggaacaaaaatgaattagtatac--acataaatgatcctaaatcatatcagttcaatag 19790325  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 156 - 249
Target Start/End: Original strand, 41324273 - 41324363
Alignment:
Q  156 aaagtgatgagcatattttgtttggaacataaattaattagtatacatacataaataatcctaaatcatatcagctcaatagcaagagtttaac 249  Q
    |||||||||| |||  |||||||||||||||| | ||||||||||||  ||||||| |||||||||||||| |||||||||| |||||||||||    
T  41324273 aaagtgatgatcattctttgtttggaacataagt-aattagtataca--cataaattatcctaaatcatataagctcaatagtaagagtttaac 41324363  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 180
Target Start/End: Complemental strand, 39742861 - 39742800
Alignment:
Q  115 tgcatataactttacttctttttctctctctctaagcatgaaaagtgatgagcatattttgtttgg 180  Q
    ||||||||||||||| | |||||||||||    ||| ||||||||||||||||||  |||||||||    
T  39742861 tgcatataactttacatttttttctctct----aagtatgaaaagtgatgagcattctttgtttgg 39742800  T

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