View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20264_high_12 (Length: 395)

Name: NF20264_high_12
Description: NF20264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20264_high_12
NF20264_high_12
[»] chr5 (3 HSPs)
chr5 (18-124)||(6915657-6915763)
chr5 (125-225)||(4154677-4154777)
chr5 (126-218)||(41642871-41642963)
[»] scaffold0854 (1 HSPs)
scaffold0854 (125-225)||(1016-1116)
[»] chr7 (2 HSPs)
chr7 (123-225)||(14699633-14699735)
chr7 (36-116)||(34868666-34868743)
[»] chr1 (1 HSPs)
chr1 (125-222)||(4229173-4229270)
[»] chr6 (1 HSPs)
chr6 (129-225)||(8551572-8551668)
[»] chr4 (1 HSPs)
chr4 (125-223)||(53305266-53305359)


Alignment Details
Target: chr5 (Bit Score: 103; Significance: 4e-51; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 18 - 124
Target Start/End: Complemental strand, 6915763 - 6915657
Alignment:
Q  18 aatctcattccataggatgtagcattgagatatcttggacacctccaccgcatgatttttacaagattattaatattgatggatctcataaaaagtcttt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  6915763 aatctcattccataggatgtagcattgagatatcttggacacctccaccgcatgattattacaagattattaatattgatggatctcataaaaagtcttt 6915664  T
Q  118 taaggat 124  Q
    |||||||    
T  6915663 taaggat 6915657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 125 - 225
Target Start/End: Complemental strand, 4154777 - 4154677
Alignment:
Q  125 gaggaatgatatctagacacaaaacttcagacacaatatcaacaacataggcagttttgtcatttcaaccttaagtcaagggtagttttgtaaaaccact 224  Q
    ||||||||||| |||||||||||| || |||||||||| ||||| |||||||| |||||| ||||||||||||||| ||||| || ||||||||||||||    
T  4154777 gaggaatgataactagacacaaaattttagacacaataccaacaccataggcaattttgttatttcaaccttaagttaagggcagctttgtaaaaccact 4154678  T
Q  225 a 225  Q
    |    
T  4154677 a 4154677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 126 - 218
Target Start/End: Original strand, 41642871 - 41642963
Alignment:
Q  126 aggaatgatatctagacacaaaacttcagacacaatatcaacaacataggcagttttgtcatttcaaccttaagtcaagggtagttttgtaaa 218  Q
    |||||||||| |||||||||||| || |||||||||||||||| ||| | || |||||| |||||||||| || |||| || ||||| |||||    
T  41642871 aggaatgataactagacacaaaattttagacacaatatcaacatcatggacaattttgttatttcaacctcaaatcaatggcagtttggtaaa 41642963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0854 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0854
Description:

Target: scaffold0854; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 125 - 225
Target Start/End: Original strand, 1016 - 1116
Alignment:
Q  125 gaggaatgatatctagacacaaaacttcagacacaatatcaacaacataggcagttttgtcatttcaaccttaagtcaagggtagttttgtaaaaccact 224  Q
    |||||||||||  ||||||||||| || |||||||||||||||| ||| |||  |||||||||||||||||||||| ||||| || ||||||||||||||    
T  1016 gaggaatgataattagacacaaaattttagacacaatatcaacaccatgggcttttttgtcatttcaaccttaagttaagggcagctttgtaaaaccact 1115  T
Q  225 a 225  Q
    |    
T  1116 a 1116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 123 - 225
Target Start/End: Complemental strand, 14699735 - 14699633
Alignment:
Q  123 atgaggaatgatatctagacacaaaacttcagacacaatatcaacaacataggcagttttgtcatttcaaccttaagtcaagggtagttttgtaaaacca 222  Q
    ||||||||||||| |||||||||||| || |||||||||| ||||| ||| |||| |||||| |||||||||| || || |||| ||||| |||||||||    
T  14699735 atgaggaatgataactagacacaaaattttagacacaataccaacaccatgggcaattttgttatttcaacctcaaatcgagggcagtttggtaaaacca 14699636  T
Q  223 cta 225  Q
    |||    
T  14699635 cta 14699633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 116
Target Start/End: Complemental strand, 34868743 - 34868666
Alignment:
Q  36 gtagcattgagatatcttggacacctccaccgcatgatttttacaagattattaatattgatggatctcataaaaagtctt 116  Q
    |||||||||||||||| |||||||||||||||||||| | |||  ||   |||||  |||||||||||| |||||||||||    
T  34868743 gtagcattgagatatcctggacacctccaccgcatgactattattag---attaacgttgatggatctcgtaaaaagtctt 34868666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 125 - 222
Target Start/End: Original strand, 4229173 - 4229270
Alignment:
Q  125 gaggaatgatatctagacacaaaacttcagacacaatatcaacaacataggcagttttgtcatttcaaccttaagtcaagggtagttttgtaaaacca 222  Q
    ||||||||||| ||||| |||||| || |||||||||| ||||| ||| |||  |||||||||||||||||||||| ||||| || ||||||||||||    
T  4229173 gaggaatgataactagatacaaaattttagacacaataccaacaccatgggcttttttgtcatttcaaccttaagttaagggcagctttgtaaaacca 4229270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 129 - 225
Target Start/End: Original strand, 8551572 - 8551668
Alignment:
Q  129 aatgatatctagacacaaaacttcagacacaatatcaacaacataggcagttttgtcatttcaaccttaagtcaagggtagttttgtaaaaccacta 225  Q
    |||||||  ||||||||||| || |||||||||| ||||| ||| |||| |||||| |||||||||| || ||||||| ||||| ||||||||||||    
T  8551572 aatgataattagacacaaaattttagacacaataccaacaccatgggcaattttgttatttcaacctcaaatcaagggcagtttggtaaaaccacta 8551668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 125 - 223
Target Start/End: Complemental strand, 53305359 - 53305266
Alignment:
Q  125 gaggaatgatatctagacacaaaacttcagacacaatatcaacaacataggcagttttgtcatttcaaccttaagtcaagggtagttttgtaaaaccac 223  Q
    ||||||||||| |||||||||||| || | |||||||| ||||| |     ||||||||||||||||||||||||| ||||| || |||||||||||||    
T  53305359 gaggaatgataactagacacaaaattttaaacacaataccaacatc-----cagttttgtcatttcaaccttaagttaagggcagctttgtaaaaccac 53305266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University