View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20264_high_16 (Length: 345)
Name: NF20264_high_16
Description: NF20264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20264_high_16 |
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Alignment Details
Target: chr6 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 13 - 294
Target Start/End: Complemental strand, 28850102 - 28849821
Alignment:
| Q |
13 |
aatatcaaaactcatctttaagcaaagcatgcaaattagagactagaatcaaaacaattcggcattgttaagcaaataaattacatatacaattttcact |
112 |
Q |
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| T |
28850102 |
aatatcaaaactcatctttaagcaaagcatgcaaattagagactagaatcaaaacaattcggcattgttaagcaaataaattacatatacaattttcact |
28850003 |
T |
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| Q |
113 |
agcttgtaagctaataataaattaattcataaatgcatactgattatgtcatgaatgtttaggccattagagaaacgttcggtgggtttgtttgtaggaa |
212 |
Q |
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| T |
28850002 |
agcttgtaagctaataataaattaattcataaacacatactgattatgtcatgaatgtttaggccattagagaaacgttcggtgagtttgtgtgtaggga |
28849903 |
T |
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| Q |
213 |
aattaatgtcatataggggagtgtgagcacgtaatgtggttaataagaaatgattgttgccattatctgccattgaattacc |
294 |
Q |
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| T |
28849902 |
aattaatgtcatataggggagtgtgagcacgtaatgtgattaataagaaatgattgttgccattatctgccattgaattacc |
28849821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 94; Significance: 8e-46; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 18 - 282
Target Start/End: Original strand, 35372390 - 35372651
Alignment:
| Q |
18 |
caaaactcatctttaagcaaagcatgcaaattagagactagaatcaaaacaattcggcattgttaagcaaataaattacatatacaattttcactagctt |
117 |
Q |
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|||| ||||||||||||||| ||||||| ||||||||||| || |||||||||| | ||||||||||||| |||||||||| || |||||||||||||| |
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| T |
35372390 |
caaatctcatctttaagcaatgcatgcacattagagactataaccaaaacaatttgtcattgttaagcaagtaaattacatgcactattttcactagctt |
35372489 |
T |
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| Q |
118 |
gta----agctaataataaattaattcataaatgcatactgattatgtcatgaatgtttaggccattagagaaacgttcggtgggtttgtttgtaggaaa |
213 |
Q |
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| T |
35372490 |
gtatttaagttaagaacaagttaa-------acacatactgattatgtcaggaatatttaggccattagagaaacgtccggtgggtttgtgtgtagggta |
35372582 |
T |
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| Q |
214 |
attaatgtcatataggggagtgtgagcacgtaatgtggttaataagaaatgattgttgccattatctgc |
282 |
Q |
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| T |
35372583 |
atcaattccatatgggggaaaatcagcacgtaatgtggtaaataataaatgattgttgccattatctgc |
35372651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 13 - 290
Target Start/End: Original strand, 35378034 - 35378306
Alignment:
| Q |
13 |
aatatcaaaactcatctttaagcaaagcatgcaaattagagactagaatcaaaacaattcggcattgttaagcaaataaattacatatacaattttcact |
112 |
Q |
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||||||||||| | ||||| |||| |||||||||| ||| ||||||| |||| | |||| ||||||||||||| |||||||||||||| ||||||||| |
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| T |
35378034 |
aatatcaaaaccctactttatgcaatgcatgcaaatgaga-actagaaccaaa-cgattcaacattgttaagcaagtaaattacatatactattttcact |
35378131 |
T |
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| Q |
113 |
agcttgtaa----gctaataataaattaattcataaatgcatactgattatgtcatgaatgtttaggccattagagaaacgttcggtgggtttgtttgta |
208 |
Q |
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|||| |||| |||||||| ||||||| | |||||||||||| ||| |||||||||||||||||||||||||| | || ||||||| ||| |
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| T |
35378132 |
agctagtaattaagctaataacaaattaa-------actcatactgattatatcaggaatgtttaggccattagagaaacgtccagtaggtttgtgcgta |
35378224 |
T |
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| Q |
209 |
ggaaaattaatgtcatataggggagtgtgagcacgtaatgtggttaataagaaatgattgttgccattatctgccattgaat |
290 |
Q |
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|| |||| |||| ||||| ||||||| | |||||| |||||||||| |||||||||||||||||||||||| ||||||| |
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| T |
35378225 |
gggaaatcaatgccatatgggggagtatcagcacgagcagtggttaataggaaatgattgttgccattatctgctattgaat |
35378306 |
T |
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