View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20264_high_17 (Length: 337)
Name: NF20264_high_17
Description: NF20264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20264_high_17 |
 |  |
|
| [»] scaffold1202 (1 HSPs) |
 |  |  |
|
| [»] scaffold0150 (1 HSPs) |
 |  |  |
|
| [»] scaffold0512 (1 HSPs) |
 |  |  |
|
Alignment Details
Target: chr6 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 18 - 326
Target Start/End: Original strand, 977260 - 977557
Alignment:
| Q |
18 |
gtcacaacaacacatcattttcacacataaataattaactttaacatcaacaattacacatcattcatgacgtcatcaaattacaaaatatcatgatgta |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
977260 |
gtcacaacaacacatcattttcacacataaataattaactttaacatcaacaattacacatcattcatgacgtcatcaaattacaaaatatcatgatgta |
977359 |
T |
 |
| Q |
118 |
tatgcaaagatgcaactctttcctaacacctatatgcatgccggtaccgatctctactcaccaaaattgtatgtcagagttatgttactgaacatacatg |
217 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
977360 |
tatgcaaagatgtaactctttcctaacacctatatgcatgccggtatcgatctctactcaccaaaattgtatatcagagttatgttactgaacatacatg |
977459 |
T |
 |
| Q |
218 |
tcaccagaatcgtcacaagaatcctaatcatgatatgatgcatgaagaaactcaccaa----atacatcatcctaaatttatatagttactcaccaacca |
313 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||| |
|
|
| T |
977460 |
tcaccagaatcgtcacaagaat---------------atgcatgaagaaactcaccaaatatatacatcacccaaaatttatatagttactcaccaacca |
977544 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 127 - 267
Target Start/End: Original strand, 8885819 - 8885960
Alignment:
| Q |
127 |
atgcaactctttcctaacacctatatgcatgccggtaccgatctctactcaccaaaattgtatgtcagagttatgttactgaac-atacatgtcaccaga |
225 |
Q |
| |
|
||||||||| |||||| |||| |||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||| | | |||| |||||||||| |
|
|
| T |
8885819 |
atgcaactccttcctatcacccatatgcataccggtaccggtctctactcaccaaaattgtatggcagagttatgttactaagcaatacgtgtcaccaga |
8885918 |
T |
 |
| Q |
226 |
atcgtcacaagaatcctaatcatgatatgatgcatgaagaaa |
267 |
Q |
| |
|
||| |||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
8885919 |
atcatcaccagaatcctaataatgatatgatgcatgaagaaa |
8885960 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 157; Significance: 2e-83; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 19 - 326
Target Start/End: Original strand, 24562728 - 24563036
Alignment:
| Q |
19 |
tcacaacaacacatcattttcacacataaataattaactttaacatcaacaattacacatcattcatgacgtcatcaaattacaaaatatcatgatgtat |
118 |
Q |
| |
|
|||| ||||||||| ||||||||||||||| ||||| | | |||||||||||||||||||||| |||||||||| ||||| |||||||||||| | ||| |
|
|
| T |
24562728 |
tcacgacaacacattattttcacacataaacaattagcataaacatcaacaattacacatcatccatgacgtcaccaaatcacaaaatatcatcctatat |
24562827 |
T |
 |
| Q |
119 |
atgcaaagatgcaactctttcctaacacctatatgcatgccggtaccgatctctactcaccaaaattgtatgtcagagttatgttactgaacatacatgt |
218 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||| || | |||||||| ||||||||||||||| ||||||||| |||||||||| || |
|
|
| T |
24562828 |
atgcgaagatgcaactctttcctaacacctatatgcatgccggtatcggtatctactcaacaaaattgtatgtcaatgttatgttagtgaacatacacgt |
24562927 |
T |
 |
| Q |
219 |
caccagaatcgtcacaagaatcctaatcatgatatgatgcatgaagaaactcaccaaatacatcatccta-aatttatatagttactcaccaaccacgtc |
317 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||||||||||||| ||| ||| ||||||| || | || |||||| ||| |||||||| || | ||| |
|
|
| T |
24562928 |
caccagaatcgtcaccagaatcttaatcatgatatgatgcatgaataaattcattaaatacaacaccatagaatttacatatttactcacgaataatgtc |
24563027 |
T |
 |
| Q |
318 |
accagaatt |
326 |
Q |
| |
|
||||||||| |
|
|
| T |
24563028 |
accagaatt |
24563036 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 19 - 326
Target Start/End: Original strand, 24603762 - 24604070
Alignment:
| Q |
19 |
tcacaacaacacatcattttcacacataaataattaactttaacatcaacaattacacatcattcatgacgtcatcaaattacaaaatatcatgatgtat |
118 |
Q |
| |
|
|||| ||||||||| ||||||||||||||| ||||| | | |||||||||||||||||||||| |||||||||| ||||| |||||||||||| | ||| |
|
|
| T |
24603762 |
tcacgacaacacattattttcacacataaacaattagcataaacatcaacaattacacatcatccatgacgtcaccaaatcacaaaatatcatcctatat |
24603861 |
T |
 |
| Q |
119 |
atgcaaagatgcaactctttcctaacacctatatgcatgccggtaccgatctctactcaccaaaattgtatgtcagagttatgttactgaacatacatgt |
218 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||| || | |||||||| ||||||||||||||| ||||||||| |||||||||| || |
|
|
| T |
24603862 |
atgcgaagatgcaactctttcctaacacctatatgcatgccggtatcggtatctactcaacaaaattgtatgtcaatgttatgttagtgaacatacacgt |
24603961 |
T |
 |
| Q |
219 |
caccagaatcgtcacaagaatcctaatcatgatatgatgcatgaagaaactcaccaaatacatcatccta-aatttatatagttactcaccaaccacgtc |
317 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||||||||||||| ||| ||| ||||||| || | || |||||| ||| |||||||| || | ||| |
|
|
| T |
24603962 |
caccagaatcgtcaccagaatcttaatcatgatatgatgcatgaataaattcattaaatacaacaccatagaatttacatatttactcacgaataatgtc |
24604061 |
T |
 |
| Q |
318 |
accagaatt |
326 |
Q |
| |
|
||||||||| |
|
|
| T |
24604062 |
accagaatt |
24604070 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 18 - 160
Target Start/End: Original strand, 17445862 - 17446004
Alignment:
| Q |
18 |
gtcacaacaacacatcattttcacacataaataattaactttaacatcaacaattacacatcattcatgacgtcatcaaattacaaaatatcatgatgta |
117 |
Q |
| |
|
||||||| ||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
17445862 |
gtcacaataacacatcattttcacacataaacaattaacataaacatcaacaattacacatcattcatgacgtcaccaaattacaaaatatcatcatgta |
17445961 |
T |
 |
| Q |
118 |
tatgcaaagatgcaactctttcctaacacctatatgcatgccg |
160 |
Q |
| |
|
||||| |||||||||||||||||||||||| |||||||||||| |
|
|
| T |
17445962 |
tatgcgaagatgcaactctttcctaacacccatatgcatgccg |
17446004 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 154 - 326
Target Start/End: Original strand, 17457924 - 17458097
Alignment:
| Q |
154 |
catgccggtaccgatctctactcaccaaaattgtatgtcagagttatgttactgaacatacatgtcaccagaatcgtcacaagaatcctaatcatgatat |
253 |
Q |
| |
|
|||||||| || | |||||||||| ||||||||||||||||||||||||||||||||||||| |||| |||||||| || ||||||||||||||||||| |
|
|
| T |
17457924 |
catgccggcactggtctctactcatcaaaattgtatgtcagagttatgttactgaacatacacgtcattagaatcgttaccagaatcctaatcatgatat |
17458023 |
T |
 |
| Q |
254 |
gatgcatgaagaaactcaccaaatacatcatccta-aatttatatagttactcaccaaccacgtcaccagaatt |
326 |
Q |
| |
|
|||||||||||||||| |||||||||| || | || |||||||||| ||||||||||| ||||||||| |||| |
|
|
| T |
17458024 |
gatgcatgaagaaacttaccaaatacaacaccatagaatttatatatttactcaccaataacgtcaccaaaatt |
17458097 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 170 - 265
Target Start/End: Original strand, 22696236 - 22696331
Alignment:
| Q |
170 |
tctactcaccaaaattgtatgtcagagttatgttactgaacatacatgtcaccagaatcgtcacaagaatcctaatcatgatatgatgcatgaaga |
265 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||||| |||||| ||| |||||| |||| ||||||| ||| | | ||||||||||||||| |
|
|
| T |
22696236 |
tctactcaccaaatttgtatgtcattattatgttactgagcatacacatcattagaatcatcactagaatccaaattaagttatgatgcatgaaga |
22696331 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 170 - 211
Target Start/End: Complemental strand, 25932981 - 25932940
Alignment:
| Q |
170 |
tctactcaccaaaattgtatgtcagagttatgttactgaaca |
211 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
25932981 |
tctactcaccaattttgtatgtcagagttatgttactgaaca |
25932940 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 117; Significance: 1e-59; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 25 - 326
Target Start/End: Complemental strand, 20874240 - 20873947
Alignment:
| Q |
25 |
caacacatcattttcacacataaataattaactttaacatcaacaattacacatc----attcatgacgtcatcaaattacaaaatatcatgatgtatat |
120 |
Q |
| |
|
|||||||||||||||||||||||| ||||| | | |||||||| ||||||||||| ||||| ||||||| |||||||||||||||| | |||||||| |
|
|
| T |
20874240 |
caacacatcattttcacacataaacaattagcataaacatcaataattacacatcgatcattcacgacgtcaccaaattacaaaatatcgtcatgtatat |
20874141 |
T |
 |
| Q |
121 |
gcaaagatgcaactctttcctaacacctatatgcatgccggtaccgatctctactcaccaaaattgtatgtcagagttatgttactgaacatacatgtca |
220 |
Q |
| |
|
|| || |||||||| |||||||| | ||||||||||||||||| || |||||||||||||||||||||||| |||||| ||||| || ||||||| |
|
|
| T |
20874140 |
gcgaacatgcaactatttcctaatatctatatgcatgccggtaacggtctctactcaccaaaattgtatgttagagttctgttaatg-acataca----- |
20874047 |
T |
 |
| Q |
221 |
ccagaatcgtcacaagaatcctaatcatgatatgatgcatgaagaaactcaccaaatacatcatcct-aaatttatatagttactcaccaaccacgtcac |
319 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||| | | | | ||||||||||| ||||||||||| ||||||| |
|
|
| T |
20874046 |
-------cgtcaccagaatcctaatcatgatatgatgcatgaagaaactcaccaaatataacgccataaaatttatatatgtactcaccaacaacgtcac |
20873954 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 170 - 326
Target Start/End: Complemental strand, 12356630 - 12356473
Alignment:
| Q |
170 |
tctactcaccaaaattgtatgtcagagttatgttactgaacatacatgtcaccagaatcgtcacaagaatcctaatcatgatatgatgcatgaagaaact |
269 |
Q |
| |
|
|||||||||||| ||| |||||||||||||| |||||||||||| | || | |||||||||||| |||||||||||||||||||||||||| || ||||| |
|
|
| T |
12356630 |
tctactcaccaatattatatgtcagagttattttactgaacatataagttatcagaatcgtcaccagaatcctaatcatgatatgatgcattaataaact |
12356531 |
T |
 |
| Q |
270 |
caccaaatacatcatcct-aaatttatatagttactcaccaaccacgtcaccagaatt |
326 |
Q |
| |
|
| | |||| || || | | ||||||| ||| ||||||||||| ||||||||| |||| |
|
|
| T |
12356530 |
ctctaaatgcaacaccataaaatttacatatttactcaccaataacgtcaccaaaatt |
12356473 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 48
Target Start/End: Original strand, 8807841 - 8807870
Alignment:
| Q |
19 |
tcacaacaacacatcattttcacacataaa |
48 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
8807841 |
tcacaacaacacatcattttcacacataaa |
8807870 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 216
Target Start/End: Complemental strand, 13561112 - 13561080
Alignment:
| Q |
184 |
ttgtatgtcagagttatgttactgaacatacat |
216 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |
|
|
| T |
13561112 |
ttgtatgtcagagttctgttactgaacatacat |
13561080 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 216
Target Start/End: Complemental strand, 51133685 - 51133653
Alignment:
| Q |
184 |
ttgtatgtcagagttatgttactgaacatacat |
216 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |
|
|
| T |
51133685 |
ttgtatgtcagagttgtgttactgaacatacat |
51133653 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 216
Target Start/End: Complemental strand, 51134015 - 51133983
Alignment:
| Q |
184 |
ttgtatgtcagagttatgttactgaacatacat |
216 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |
|
|
| T |
51134015 |
ttgtatgtcagagttgtgttactgaacatacat |
51133983 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1202 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: scaffold1202
Description:
Target: scaffold1202; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 170 - 319
Target Start/End: Original strand, 920 - 1069
Alignment:
| Q |
170 |
tctactcaccaaaattgtatgtcagagttatgttactgaacatacatgtcaccagaatcgtcacaagaatcctaatcatgatatgatgcatgaagaaact |
269 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
920 |
tctactcaccaatattatatgtcagagttatgttactgaacatacacgtcactagaatcgtcaccagaatcctaatcataatatgatgcatgaagaaact |
1019 |
T |
 |
| Q |
270 |
caccaaatacatcatcctaaatttatatagttactcaccaaccacgtcac |
319 |
Q |
| |
|
||||||||||| || | |||||||| ||| ||||||||||| ||||||| |
|
|
| T |
1020 |
caccaaatacaacaccataaatttacatatttactcaccaataacgtcac |
1069 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0150 (Bit Score: 91; Significance: 5e-44; HSPs: 1)
Name: scaffold0150
Description:
Target: scaffold0150; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 172 - 326
Target Start/End: Complemental strand, 7072 - 6918
Alignment:
| Q |
172 |
tactcaccaaaattgtatgtcagagttatgttactgaacatacatgtcaccagaatcgtcacaagaatcctaatcatgatatgatgcatgaagaaactca |
271 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||||||||| ||||||||||||| ||| ||||| |||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
7072 |
tactcaccaatattatatgtcagagttatgttactgaagatacatgtcaccataattgtcaccagaatcataatcatgatatgatgtatgaagaaactca |
6973 |
T |
 |
| Q |
272 |
ccaaatacatcatcctaaatttatatagttactcaccaaccacgtcaccagaatt |
326 |
Q |
| |
|
||||||||| || | |||||||| ||| ||||||||||| ||||||| |||||| |
|
|
| T |
6972 |
ccaaatacaacaccataaatttacatatttactcaccaataacgtcacaagaatt |
6918 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 144 - 267
Target Start/End: Complemental strand, 39527441 - 39527319
Alignment:
| Q |
144 |
cacctatatgcatgccggtaccgatctctactcaccaaaattgtatgtcagagttatgttactga-acatacatgtcaccagaatcgtcacaagaatcct |
242 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||| | | || |||||||||||||| | ||||| ||||| ||| |||||||||||| | |
|
|
| T |
39527441 |
cacctatatgcatgccggtacctgtctctactcaccaaaatttaaagacatagttatgttactgagaaatacacatcacc--aattgtcacaagaatctt |
39527344 |
T |
 |
| Q |
243 |
aatcatgatatgatgcatgaagaaa |
267 |
Q |
| |
|
||| |||||| ||||||||||||| |
|
|
| T |
39527343 |
aataatgatacaatgcatgaagaaa |
39527319 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 170 - 267
Target Start/End: Complemental strand, 6714972 - 6714877
Alignment:
| Q |
170 |
tctactcaccaaaattgtatgtcagagttatgttactgaacatacatgtcaccagaatcgtcacaagaatcctaatcatgatatgatgcatgaagaaa |
267 |
Q |
| |
|
||||| || ||| ||||||||||| |||||| ||||||| |||||| |||||| || |||| ||||||||||| |||||||||||||| |||||| |
|
|
| T |
6714972 |
tctacacatcaatattgtatgtcaaagttatattactgagcatacacatcacca--ataatcactagaatcctaattatgatatgatgcattaagaaa |
6714877 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 216
Target Start/End: Complemental strand, 11802223 - 11802155
Alignment:
| Q |
145 |
acctatatgcatgccggtaccgatctctactcaccaaaattgtatgtcagagttatgttactgaacatacat |
216 |
Q |
| |
|
|||||||||||| ||||||||| | |||| |||| | ||||||||||||||||||||||| | ||||||| |
|
|
| T |
11802223 |
acctatatgcatcccggtaccggtttctaatcac---atttgtatgtcagagttatgttactaagcatacat |
11802155 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 216
Target Start/End: Complemental strand, 9694735 - 9694703
Alignment:
| Q |
184 |
ttgtatgtcagagttatgttactgaacatacat |
216 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |
|
|
| T |
9694735 |
ttgtatgtcagagttctgttactgaacatacat |
9694703 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 216
Target Start/End: Complemental strand, 16381367 - 16381335
Alignment:
| Q |
184 |
ttgtatgtcagagttatgttactgaacatacat |
216 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |
|
|
| T |
16381367 |
ttgtatgtcagagttatgttacttaacatacat |
16381335 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 208
Target Start/End: Original strand, 12088425 - 12088463
Alignment:
| Q |
170 |
tctactcaccaaaattgtatgtcagagttatgttactga |
208 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
12088425 |
tctactcatcaaaattgtatgtcagagttatgttcctga |
12088463 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0512 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0512
Description:
Target: scaffold0512; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 216
Target Start/End: Original strand, 7475 - 7507
Alignment:
| Q |
184 |
ttgtatgtcagagttatgttactgaacatacat |
216 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |
|
|
| T |
7475 |
ttgtatgttagagttatgttactgaacatacat |
7507 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 216
Target Start/End: Original strand, 17614083 - 17614115
Alignment:
| Q |
184 |
ttgtatgtcagagttatgttactgaacatacat |
216 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |
|
|
| T |
17614083 |
ttgtatgtcagagttatgttactgagcatacat |
17614115 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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