View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20264_high_19 (Length: 327)
Name: NF20264_high_19
Description: NF20264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20264_high_19 |
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Alignment Details
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 14 - 310
Target Start/End: Complemental strand, 1464553 - 1464257
Alignment:
| Q |
14 |
cacagacacactttcacttgtaagtgtttatgccgcataattcattactcttcaacaataatttccacttctgaaatctttttcaaccattcaattggct |
113 |
Q |
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| T |
1464553 |
cacagacacactttcactcgtcagtgtttatgccgcataattcattactcttcaacaataatttccacttctgaaatctttttcaaccattcaattggct |
1464454 |
T |
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| Q |
114 |
taccttgccatttcagcacgtttcttggcttgctctgcaatctctgaaagctcctcatagctactatactcattgatagtgttggaggtaggaggctgaa |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1464453 |
taccttgccatttcagcacgtttcttggcttgctctgcaatctctgaaagctcctcatagctactatactcattgatagtgttggaggtaggaggctgaa |
1464354 |
T |
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| Q |
214 |
gaccatggcgtgatctttgcgctgatgcccattgtgcttccctattttctctaccatagtctttctttgatgtgaaggcagtctgtaacgagaaaat |
310 |
Q |
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| T |
1464353 |
gaccatggcgtgatctttgcgctgatgcccattgtgcttccctattttctctaccatagtctttctttgatgtgaaggcagtctgtaacgagaaaat |
1464257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 53 - 280
Target Start/End: Complemental strand, 1491905 - 1491676
Alignment:
| Q |
53 |
attcattactcttcaaca-ataatttccacttctgaaatctttttcaa-ccattcaattggcttaccttgccatttcagcacgtttcttggcttgctctg |
150 |
Q |
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|||||||||||||||| | ||| ||||||||||| ||||||||| || ||||| || ||| ||| ||||| | ||||||| |||||||| ||||||||| |
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| T |
1491905 |
attcattactcttcaatacatactttccacttctttaatcttttttaaaccatttaaatggattaacttgcaacttcagcatgtttcttgtcttgctctg |
1491806 |
T |
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| Q |
151 |
caatctctgaaagctcctcatagctactatactcattgatagtgttggaggtaggaggctgaagaccatggcgtgatctttgcgctgatgcccattgtgc |
250 |
Q |
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| T |
1491805 |
caatctctgaaagctccctatagctactattttcattgaaaaggtttgaggtaaaaggttgaagaccatgaagtgatccttgtgttgtttcccattgtgc |
1491706 |
T |
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| Q |
251 |
ttccctattttctctaccatagtctttctt |
280 |
Q |
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||| || | || | |||||||||||||||| |
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| T |
1491705 |
ttctctctgttatttaccatagtctttctt |
1491676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 92 - 280
Target Start/End: Original strand, 1490388 - 1490576
Alignment:
| Q |
92 |
tttttcaaccattcaattggcttaccttgccatttcagcacgtttcttggcttgctctgcaatctctgaaagctcctcatagctactatactcattgata |
191 |
Q |
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||||| |||||||||| ||||||||||||| | | || | |||||||| |||||||| ||||||||||||||||| |||||||||| ||||| | | |
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| T |
1490388 |
tttttaaaccattcaaatggcttaccttgcaactacaacgtgtttcttgtcttgctctacaatctctgaaagctccctttagctactattttcattcaaa |
1490487 |
T |
|
| Q |
192 |
gtgttggaggtaggaggctgaagaccatggcgtgatctttgcgctgatgcccattgtgcttccctattttctctaccatagtctttctt |
280 |
Q |
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||| |||||| |||||||| |||||| |||||| || |||| | |||||||||||| || | |||| |||||||||||||||| |
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| T |
1490488 |
aggttcgaggtaaaaggctgaacaccatgaagtgatccctgtgctgctttccattgtgcttctctctcttctttaccatagtctttctt |
1490576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 116 - 299
Target Start/End: Original strand, 1495269 - 1495455
Alignment:
| Q |
116 |
ccttgccatttcagcacgtttcttggcttgctctgcaatctctgaaagctcctcatagctactatactcattgatagtgttggaggta---ggaggctga |
212 |
Q |
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|||||| | |||||||||| ||||||||||||| |||||||| ||||| || ||||||| | | ||||||| | |||||||| ||||||||| |
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| T |
1495269 |
ccttgcaacttcagcacgtctcttggcttgctccgcaatctccgaaagttctctatagctattcttttcattgaaaacgttggaggcttccggaggctga |
1495368 |
T |
|
| Q |
213 |
agaccatggcgtgatctttgcgctgatgcccattgtgcttccctattttctctaccatagtctttctttgatgtgaaggcagtctgt |
299 |
Q |
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| T |
1495369 |
agaccgtgaagtgttctctgcgcagccgcccattgtgcttccctctcttcttttccatagtctttctttgtagtgaaggcagtctgt |
1495455 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 141; Significance: 7e-74; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 21 - 310
Target Start/End: Complemental strand, 26792250 - 26791969
Alignment:
| Q |
21 |
acactttcacttgtaagtgtttatgccgcataattcattactcttcaacaataatttccacttctgaaatctttttcaaccattcaattggcttaccttg |
120 |
Q |
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||||||||||| ||||||||| || |||||||||||||||||||| |||||||||||||| |||||||||||||||| |||||||||||| |
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| T |
26792250 |
acactttcactcataagtgtttgtgatacataattcattactcttcaataataatttccactt--------tttttcaaccattcaagtggcttaccttg |
26792159 |
T |
|
| Q |
121 |
ccatttcagcacgtttcttggcttgctctgcaatctctgaaagctcctcatagctactatactcattgatagtgttggaggtaggaggctgaagaccatg |
220 |
Q |
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| T |
26792158 |
caatttcggcacgtttcctggctagatctgcaatttctgaaagctccttatagctactattttcattgaaagtgtaggagctagaaggctgaagaccatg |
26792059 |
T |
|
| Q |
221 |
gcgtgatctttgcgctgatgcccattgtgcttccctattttctctaccatagtctttctttgatgtgaaggcagtctgtaacgagaaaat |
310 |
Q |
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||||||||| | ||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||| |||||||| |
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| T |
26792058 |
aattgatctttgtgttgatgcccattgtgcttccctctgttctctaccatagtctttctttgaagtgaaggcagtctgtaatgagaaaat |
26791969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 300
Target Start/End: Complemental strand, 50278023 - 50277990
Alignment:
| Q |
267 |
ccatagtctttctttgatgtgaaggcagtctgta |
300 |
Q |
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|||||||||||||||| ||||||||||||||||| |
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| T |
50278023 |
ccatagtctttctttgttgtgaaggcagtctgta |
50277990 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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