View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20264_high_2 (Length: 632)
Name: NF20264_high_2
Description: NF20264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20264_high_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 555; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 555; E-Value: 0
Query Start/End: Original strand, 1 - 604
Target Start/End: Complemental strand, 9375810 - 9375191
Alignment:
| Q |
1 |
tggtgtttgaatcagtaacagaggcggtggaaatatttgtgcggagttcgttgaaagtggaatataaaggtttcaattattcattttgtcaatggtgtga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9375810 |
tggtgtttgaatcagtaacagaggcggtggaaatatttgtgcggagttcgttgaaagtggaatataaaggtttcaattattcattttgtcaatggtgtga |
9375711 |
T |
|
| Q |
101 |
aagtccaagacaatgtaaccatattagcctccctcttagagagctctacattagagttgttacaaatatcagataaactaactctacatctagctaaaat |
200 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9375710 |
aaatccaagacaatgtaaccatattagcctccctcttagagagctctacattagagttgttacaaatatcagataaactaactctacatctagctaaaat |
9375611 |
T |
|
| Q |
201 |
acaacctaactctgtatcgtcacacgcaccggagatgaaagaatctac----------------aagcagaaaatcactctttcgaacaccaactcattc |
284 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
9375610 |
acaacctaactctgtatcgtcacgcgcaccggagatgaaagaatctaccacaccttttgaatccaagcagaaaatcactctttcgaacaccaactcattc |
9375511 |
T |
|
| Q |
285 |
acccaatccatgtcttctagcagccctaacacttcttcaattgcaactgtcatgatcagctgtaaccatgttttttcgctaacataaacataccgaattt |
384 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9375510 |
acccaatccatgtcttctagcagccctaacacttcttcaattgcaactgtcatgatcagctgtaaccatgttttttcgctaacataaacataccgaattt |
9375411 |
T |
|
| Q |
385 |
atctctcaagtacattcatatctccactctattatgataatccaagaacgaaacattgacggtacacacacttgataaaggtgtaaggcggacgctgcca |
484 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9375410 |
atctctcaagtacattcatatctccactctattatgatactccaagaacgaaacattgacggtacacacacttgataaaggtgtaaggcggacgctgcca |
9375311 |
T |
|
| Q |
485 |
tttaaaacttttgtggctggtctagttttgctgctcaacatttattgcattccgccattctgtcaacaaacaatttcctctgtcattctgtcaacaaaca |
584 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9375310 |
tttaaaacttttgtggctggtctagttttgctgctcaacatttattgcattccgccattctgtcaacaaacaatttcctctgtcattctgtcaacaaaca |
9375211 |
T |
|
| Q |
585 |
atatgtcctttacctttgat |
604 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
9375210 |
atatgtcctttacctttgat |
9375191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 3 - 569
Target Start/End: Complemental strand, 9350963 - 9350389
Alignment:
| Q |
3 |
gtgtttgaatcagtaacagaggcggtggaaatatttgtgcggagttcgttgaaagtggaatataaaggtttcaattattcattttgtcaatggtgtgaaa |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9350963 |
gtgtttgaatcagtaacagaggcggtggaaatatttgcccggagttggttgaaagtggaatataaaggtttcaattattcattttgtcaatggtgtgaaa |
9350864 |
T |
|
| Q |
103 |
gtccaagacaatgtaaccatattagcctccctcttagagagctctacattagagttgttacaaatatcagataaactaactctacatctagctaaaatac |
202 |
Q |
| |
|
|||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
9350863 |
atccaagacaatgcaaccatgttagcctccctcttagagagctcgacattagagttgttacaaatatcagataaactaactctacatctagcgaaaatag |
9350764 |
T |
|
| Q |
203 |
aacctaactctgtatcgtcacacgcaccggagatgaaagaatcta-----------------caagcagaaaatcactctttcgaacaccaactcattca |
285 |
Q |
| |
|
||||||||| |||||| |||| |||||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9350763 |
aacctaactttgtatcatcacgtgcaccgtagatgaaagggtctaaccacaccttttgaatccaagcagaaaatcactctttcgaacaccaactcattca |
9350664 |
T |
|
| Q |
286 |
cccaatccatgtcttctagcagccctaacacttcttcaattgcaactgtcatgatcagctgtaaccatgttttttcgctaacataaacataccgaattta |
385 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
9350663 |
cccaatccatgtctgctagcagccctaacacttc-------acaactgtcataatcagctgtaaccatg--ttttcgctaacataaacataccgaattta |
9350573 |
T |
|
| Q |
386 |
tctctcaagtacattcatatctccactctattatgataatccaagaacgaaacattgacggtacacacacttgataaaggtgtaaggcggacgctgccat |
485 |
Q |
| |
|
| ||||||| |||||||||| |||||||||||||||| |||||||||||||||| |||| |||||||||||||||| ||||||||| |||| || |||| |
|
|
| T |
9350572 |
tatctcaagcacattcatatacccactctattatgatactccaagaacgaaacatcgacgttacacacacttgataatggtgtaagggggacactcccat |
9350473 |
T |
|
| Q |
486 |
ttaaaacttttgtggctggtctagttttgctgctcaacatttattgcattccgccattctgtcaacaaacaatttcctctgtca |
569 |
Q |
| |
|
|||||||| || |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9350472 |
ttaaaactgttctggctggtctggttttgctgctcaacatttcttgcattccgccattctgtcaacaaacaatttcctctgtca |
9350389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 117 - 197
Target Start/End: Complemental strand, 6470881 - 6470799
Alignment:
| Q |
117 |
aaccatattagcctccctct--tagagagctctacattagagttgttacaaatatcagataaactaactctacatctagctaa |
197 |
Q |
| |
|
||||||||||| ||| |||| |||| | ||| |||| ||||||||||||||||||||||||| | |||||||| |||||||| |
|
|
| T |
6470881 |
aaccatattagtctctctctcctagaaaactcgacataagagttgttacaaatatcagataaatttactctacacctagctaa |
6470799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 148 - 197
Target Start/End: Original strand, 6750382 - 6750431
Alignment:
| Q |
148 |
acattagagttgttacaaatatcagataaactaactctacatctagctaa |
197 |
Q |
| |
|
|||| ||||||||||||||||||||||||| | |||||||| |||||||| |
|
|
| T |
6750382 |
acataagagttgttacaaatatcagataaatttactctacacctagctaa |
6750431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 148 - 196
Target Start/End: Original strand, 41289865 - 41289913
Alignment:
| Q |
148 |
acattagagttgttacaaatatcagataaactaactctacatctagcta |
196 |
Q |
| |
|
|||| ||||||||||| ||||||||||||| |||||||||| ||||||| |
|
|
| T |
41289865 |
acataagagttgttacgaatatcagataaattaactctacacctagcta |
41289913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 117 - 197
Target Start/End: Original strand, 8746553 - 8746633
Alignment:
| Q |
117 |
aaccatattagcctccctcttagagagctctacattagagttgttacaaatatcagataaactaactctacatctagctaa |
197 |
Q |
| |
|
||||||||||||||| ||| |||| | ||| |||| ||||||||||||||||| ||||||| | |||||||| |||||||| |
|
|
| T |
8746553 |
aaccatattagcctctctcctagaaaactcgacataagagttgttacaaatattagataaatttactctacacctagctaa |
8746633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000006; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 117 - 188
Target Start/End: Original strand, 6955089 - 6955160
Alignment:
| Q |
117 |
aaccatattagcctccctcttagagagctctacattagagttgttacaaatatcagataaactaactctaca |
188 |
Q |
| |
|
||||||||||| ||| |||||||| | ||| |||| ||||||||||||||||| ||||||| | |||||||| |
|
|
| T |
6955089 |
aaccatattagtctctctcttagaaaactcgacataagagttgttacaaatattagataaatttactctaca |
6955160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 155 - 218
Target Start/End: Complemental strand, 27998268 - 27998205
Alignment:
| Q |
155 |
agttgttacaaatatcagataaactaactctacatctagctaaaatacaacctaactctgtatc |
218 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||| |||| || | | |||||||||||| |
|
|
| T |
27998268 |
agttgttacaaatatcagataaatcatctctacatctagttaaagtagagcttaactctgtatc |
27998205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 155 - 218
Target Start/End: Complemental strand, 28055570 - 28055507
Alignment:
| Q |
155 |
agttgttacaaatatcagataaactaactctacatctagctaaaatacaacctaactctgtatc |
218 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||| |||| || | | |||||||||||| |
|
|
| T |
28055570 |
agttgttacaaatatcagataaatcatctctacatctagttaaagtagagcttaactctgtatc |
28055507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University