View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20264_high_21 (Length: 316)
Name: NF20264_high_21
Description: NF20264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20264_high_21 |
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| [»] scaffold0036 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 112; Significance: 1e-56; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 98 - 289
Target Start/End: Complemental strand, 3083289 - 3083099
Alignment:
| Q |
98 |
gtagccattgttttctcaaagaaaatgcagtcaaatagctacttaaaatcgtgaggtaagcaacctttaatgctcaaaccaagtgaaagttcctcatgca |
197 |
Q |
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||||||||||||| |||| ||| |||||||| ||||||||||| ||||| ||||||||| |||||||||| |||||||||| |||||||||||| |||| |
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| T |
3083289 |
gtagccattgtttgctcagagagaatgcagttaaatagctactataaatc-tgaggtaagtaacctttaattctcaaaccaaatgaaagttcctcttgca |
3083191 |
T |
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| Q |
198 |
taagatgtagttattccaattaaggcttgtgcacatgtatgttaactccaatagcagtctcctcattctcagtccctaaatgaataaagcag |
289 |
Q |
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| T |
3083190 |
taagatgtagctgttccaattaaagtttgtgcacatgtatgttaactccaatagcagtttcctcattctccacccctaaatgaataaagcag |
3083099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 98 - 288
Target Start/End: Complemental strand, 38404072 - 38403892
Alignment:
| Q |
98 |
gtagccattgttttctcaaagaaaatgcagtcaaatagctacttaaaatcgtgaggtaagcaacctttaatgctcaaaccaagtgaaagttcctcatgca |
197 |
Q |
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| T |
38404072 |
gtagccattgtttgctcagagagaatgcagtcaaatagctacttaaaatcctgaggtaagcaacctttaatgctcaacctaagtgaaagtagctgcaact |
38403973 |
T |
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| Q |
198 |
taagatgtagttattccaattaaggcttgtgcacatgtatgttaactccaatagcagtctcctcattctcagtccctaaatgaataaagca |
288 |
Q |
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| T |
38403972 |
taagatgtagttattacaattaaagtttg----------tgttaactccaatggcagtctcctcattctcagcccctaaatgaataaagca |
38403892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 11 - 92
Target Start/End: Complemental strand, 38404220 - 38404139
Alignment:
| Q |
11 |
aagaaaatcaataacaataattacttttcaatttcaatcaattcaaacaaagtaagaaacacaaaaattatcacgttaattt |
92 |
Q |
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| T |
38404220 |
aagaaaatcaataacaataatcacttttcaatttcaatcaattcaaacaaagaaagaaacaaaaaaattctcaagttaattt |
38404139 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 112; Significance: 1e-56; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 98 - 289
Target Start/End: Complemental strand, 40910038 - 40909848
Alignment:
| Q |
98 |
gtagccattgttttctcaaagaaaatgcagtcaaatagctacttaaaatcgtgaggtaagcaacctttaatgctcaaaccaagtgaaagttcctcatgca |
197 |
Q |
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| T |
40910038 |
gtagccattgtttgctcagagagaatgcagttaaatagctactataaatc-tgaggtaagtaacctttaattctcaaaccaaatgaaagttcctcttgca |
40909940 |
T |
|
| Q |
198 |
taagatgtagttattccaattaaggcttgtgcacatgtatgttaactccaatagcagtctcctcattctcagtccctaaatgaataaagcag |
289 |
Q |
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| T |
40909939 |
taagatgtagctgttccaattaaagtttgtgcacatgtatgttaactccaatagcagtttccttattctccgcccctaaatgaataaagcag |
40909848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 11 - 92
Target Start/End: Complemental strand, 33814194 - 33814113
Alignment:
| Q |
11 |
aagaaaatcaataacaataattacttttcaatttcaatcaattcaaacaaagtaagaaacacaaaaattatcacgttaattt |
92 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
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| T |
33814194 |
aagaaaatcaataacaataatcacttttcaatttcaatcaattcaaacaaaggaagaaacacaaaaattatcaagttaattt |
33814113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 11 - 92
Target Start/End: Complemental strand, 33873664 - 33873583
Alignment:
| Q |
11 |
aagaaaatcaataacaataattacttttcaatttcaatcaattcaaacaaagtaagaaacacaaaaattatcacgttaattt |
92 |
Q |
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| T |
33873664 |
aagaaaatcaataacaataatcacttttcaatttcaatcaattcaaacaaaggaagaaacacaaaaattatcaagttaattt |
33873583 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 84; Significance: 6e-40; HSPs: 2)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 98 - 288
Target Start/End: Complemental strand, 99662 - 99482
Alignment:
| Q |
98 |
gtagccattgttttctcaaagaaaatgcagtcaaatagctacttaaaatcgtgaggtaagcaacctttaatgctcaaaccaagtgaaagttcctcatgca |
197 |
Q |
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||||||||||||| |||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||||| || | |
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| T |
99662 |
gtagccattgtttgctcagagagaatgcagtcaaatagctacttaaaatcctgaggtaagcaacctttaatgctcaacctaagtgaaagtagctgcaact |
99563 |
T |
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| Q |
198 |
taagatgtagttattccaattaaggcttgtgcacatgtatgttaactccaatagcagtctcctcattctcagtccctaaatgaataaagca |
288 |
Q |
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| T |
99562 |
taagatgtagttattacaattaaagtttg----------tgttaactccaatggcagtctcctcattctcagcccctaaatgaataaagca |
99482 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 11 - 92
Target Start/End: Complemental strand, 99810 - 99729
Alignment:
| Q |
11 |
aagaaaatcaataacaataattacttttcaatttcaatcaattcaaacaaagtaagaaacacaaaaattatcacgttaattt |
92 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| ||||||| ||| |||||||| |
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| T |
99810 |
aagaaaatcaataacaataatcacttttcaatttcaatcaattcaaacaaagaaagaaacaaaaaaattctcaagttaattt |
99729 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 146
Target Start/End: Original strand, 24469255 - 24469303
Alignment:
| Q |
98 |
gtagccattgttttctcaaagaaaatgcagtcaaatagctacttaaaat |
146 |
Q |
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||||||||||||| |||| ||| |||| |||||||||||||||||||| |
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| T |
24469255 |
gtagccattgtttgctcagagagaatgtggtcaaatagctacttaaaat |
24469303 |
T |
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