View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20264_high_22 (Length: 311)
Name: NF20264_high_22
Description: NF20264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20264_high_22 |
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Alignment Details
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 17 - 302
Target Start/End: Complemental strand, 29601861 - 29601568
Alignment:
| Q |
17 |
acttcatgctcacctaacatcaaaatgaatatactacctaataccataaatttaggtaaagaaa----ataaac-catacaatcaaaaagatcaaaacgg |
111 |
Q |
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| T |
29601861 |
acttcatgctcacctaacatcaaaatgaatatactacctaataccataaatttaggtaaaaaaataaaataaaatcatacaatcaaaaagatcaaaacgg |
29601762 |
T |
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| Q |
112 |
ggagtgaaatggttggacattttac-atacca----ggtgattcaaaagaactattttaacatgtattatagacgagcatgatacatgagatgacataga |
206 |
Q |
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||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
29601761 |
ggagtgaaatggttggacattttaccataccacttaggtgattcaaaagaactattttaacatgtattatagacgagtatgatacatgagatgacataga |
29601662 |
T |
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| Q |
207 |
tatcttttaacttgaccaaagtccagggaattggaatctatctaacacatacaacaacattaaaactcttacggagctcgagagattagtctctgc |
302 |
Q |
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|||||||||||||||| ||||||||||| | ||||||| || |||||| ||||||| ||||||||||||| |||||||||||||||||||||| |
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| T |
29601661 |
tatcttttaacttgactaaagtccaggg--ctagaatctaccttacacatgcaacaacgttaaaactcttactcagctcgagagattagtctctgc |
29601568 |
T |
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