View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20264_high_26 (Length: 263)
Name: NF20264_high_26
Description: NF20264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20264_high_26 |
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Alignment Details
Target: chr4 (Bit Score: 153; Significance: 4e-81; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 11592437 - 11592281
Alignment:
| Q |
1 |
ttattggttgctttgttgggtcatgtttttggacatggaatgagaaacaataatggtggtggtgttatgcaaacttggaaccttttggcttctcttttga |
100 |
Q |
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| T |
11592437 |
ttattggttgctttgttgggtcatgtttttggacatggaatgagaaacaataatggtggtggtgttatgcaatcttggaaccttttggcttctcttttga |
11592338 |
T |
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| Q |
101 |
ctgtttttgttaactctgtttacttggagcctagggccactaaggtatgttctagct |
157 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11592337 |
ctgtttttgttaactctgtttacttggagcctagggccactaaggtatgttctagct |
11592281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 11645682 - 11645838
Alignment:
| Q |
1 |
ttattggttgctttgttgggtcatgtttttggacatggaatgagaaacaataatggtggtggtgttatgcaaacttggaaccttttggcttctcttttga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
11645682 |
ttattggttgctttgttgggtcatgtttttggacatggaatgagaaacaataatggtggtggtgttatgcaatcttggaaccttttggcttctcttttga |
11645781 |
T |
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| Q |
101 |
ctgtttttgttaactctgtttacttggagcctagggccactaaggtatgttctagct |
157 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11645782 |
ctgtttttgttaactctgtttacttggagcctagggccactaaggtatgttctagct |
11645838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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