View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20264_high_32 (Length: 247)
Name: NF20264_high_32
Description: NF20264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20264_high_32 |
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Alignment Details
Target: chr6 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 28850240 - 28850477
Alignment:
| Q |
1 |
ctgtaagtttagttagtttttaatgttatagatatgactagttagttttgttataggaggataaaactgttagtgacatgaatcaaacattgatcatcct |
100 |
Q |
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| T |
28850240 |
ctgtaagtttagttagttgttaatgttataaatatgactggttacttttgttataggaggataaaactgttagtgacatgaatcaaacattgatcatcct |
28850339 |
T |
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| Q |
101 |
tttttaactccctcactgttctagaggcgaatccatga--annnnnnnnngtggttaaaatgataatgtcaaaaaatttgtccaattaaatattctctcc |
198 |
Q |
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| T |
28850340 |
tttttaactccctcactgttctaaatgcggatccatgaatatttttttttgtggttcaaatgataatgtcaaaaaaaat-tccaattaaatattctctcc |
28850438 |
T |
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| Q |
199 |
ttctatgctatgtccaaatcattttgtcttctatatatt |
237 |
Q |
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| T |
28850439 |
ttctatgctatgtgcaaatcattttgtcttctatatatt |
28850477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 2 - 103
Target Start/End: Complemental strand, 35372237 - 35372136
Alignment:
| Q |
2 |
tgtaagtttagttagtttttaatgttatagatatgactagttagttttgttataggaggataaaactgttagtgacatgaatcaaacattgatcatcctt |
101 |
Q |
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||||||||||||||||| ||| ||||||| |||||||| |||||||||||||||||| || ||| || ||||||| |||||||||| |||||||||||| |
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| T |
35372237 |
tgtaagtttagttagttgttattgttataaatatgactggttagttttgttataggatgacgaaattgctagtgacgtgaatcaaactttgatcatcctt |
35372138 |
T |
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| Q |
102 |
tt |
103 |
Q |
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|| |
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| T |
35372137 |
tt |
35372136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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