View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20264_low_1 (Length: 686)
Name: NF20264_low_1
Description: NF20264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20264_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 320; Significance: 1e-180; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 352
Target Start/End: Complemental strand, 54714083 - 54713732
Alignment:
| Q |
1 |
caaaacgaagctagtttaaccgtgtgggaagcatgcatggcgttaaatatgatggttaattaattgaccagttaatagttgcatgatagaaagactggct |
100 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54714083 |
caaaactaagctagtttaaccgtgtgggaagcatgcatggcgttaaatatgatggttaattaattgaccagttaatagttgcatgatagaaagactggct |
54713984 |
T |
|
| Q |
101 |
aaaaagtgaaacttttgaagagcgaatgattctgcatttgtcttcacttttgaagagccaatgaagacttgctaacaaatacaaaattagctacaacatc |
200 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
54713983 |
aaaaaatgaaacttttgaagagcgaatgattctgcatttgtcttcacttttgaagagccaatgaagacttgctaacaaatacaaaattagttacaacatc |
54713884 |
T |
|
| Q |
201 |
aatgaagaattcaaatatagaacgttacagcaaatgtttgggttcatcgttatattaaatttattccattaatactaatatgctagatgaatggtaaatt |
300 |
Q |
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|||||||||||| ||||||||||||||| |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
54713883 |
aatgaagaattccaatatagaacgttacggcaattgtttgcgttcatcgttatattaaatttattccattaatactaatatgctagatgaatggtcaatt |
54713784 |
T |
|
| Q |
301 |
ttactatgttggagtcaacatctgatgtgttaaatcatatctaccaatcaaa |
352 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54713783 |
ttactatgttggagtcaacatctgatgtgttaaatcatatctaccaatcaaa |
54713732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 148; E-Value: 9e-78
Query Start/End: Original strand, 414 - 663
Target Start/End: Complemental strand, 54713461 - 54713208
Alignment:
| Q |
414 |
atttttcgagtggttatacatgaacaaccaccttatatggctaccactctttgtacaccttccacatgtctaaaaaata-tataaaataatcttatgaaa |
512 |
Q |
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|||||| ||||| |||||||||||| |||| ||| |||||||||||||||||||||||||||| ||||||||||| | |||||||||||||||||||| |
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| T |
54713461 |
attttttgagtgattatacatgaac---caccctatgtggctaccactctttgtacaccttccacgtgtctaaaaaaaaatataaaataatcttatgaaa |
54713365 |
T |
|
| Q |
513 |
-gtgccatctcataaaagaagacnnnnnnnnn-----ttaagtcccaaccctcagcttctctaaaaacggatctcttctctctccccaccaccatccatt |
606 |
Q |
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|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
54713364 |
agtgccatctcataaaagaagacaaaaaaaaaaaaaattaagtcccaaccctcatcttctctaaaaacggatctcttctctctccccaccaccatacatt |
54713265 |
T |
|
| Q |
607 |
gccatcgccgcaaactccgaccatcctttcgtcccagctccgatttcaacaactcaa |
663 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54713264 |
gccatcgccgcaaactccgaccatcctttcgtcccagctccgatttcaacaactcaa |
54713208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 255 - 352
Target Start/End: Complemental strand, 54679973 - 54679876
Alignment:
| Q |
255 |
ttaaatttattccattaatactaatatgctagatgaatggtaaattttactatgttggagtcaacatctgatgtgttaaatcatatctaccaatcaaa |
352 |
Q |
| |
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||||||||||| ||||||||||| |||||||||||| ||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |
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| T |
54679973 |
ttaaatttattacattaatactacaatgctagatgaagggtcaattttactatgttgtactcaacatctgatgtgttaaatcatatctaccaatcaaa |
54679876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 148 - 255
Target Start/End: Complemental strand, 54680242 - 54680135
Alignment:
| Q |
148 |
ttttgaagagccaatgaagacttgctaacaaatacaaaattagctacaacatcaatgaagaattcaaatatagaacgttacagcaaatgtttgggttcat |
247 |
Q |
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||||||||||||||||||||| ||||||||||||||||| || ||||||||||| | ||||||| |||||||||| |||| |||| ||||||||||||| |
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| T |
54680242 |
ttttgaagagccaatgaagaccggctaacaaatacaaaatcagttacaacatcaacgtagaattccaatatagaactttacggcaattgtttgggttcat |
54680143 |
T |
|
| Q |
248 |
cgttatat |
255 |
Q |
| |
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|||||||| |
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|
| T |
54680142 |
cgttatat |
54680135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 54721003 - 54720933
Alignment:
| Q |
1 |
caaaacgaagctagtttaaccgtgtgggaagcatgcatggcgttaaatatgatggttaattaattgaccag |
71 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
54721003 |
caaaactaagctagtttaaccgtgtgggaagcatgcatggcgttaaatatgatggttaattaatggaccag |
54720933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 8 - 69
Target Start/End: Complemental strand, 54680354 - 54680297
Alignment:
| Q |
8 |
aagctagtttaaccgtgtgggaagcatgcatggcgttaaatatgatggttaattaattgacc |
69 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
54680354 |
aagctagtttaaccgtgtgggaagcatg----gcgttaaatatgatggttaattaattgacc |
54680297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 376 - 418
Target Start/End: Complemental strand, 54713517 - 54713475
Alignment:
| Q |
376 |
tcaaaagggttgaaatctagtttataaatattgcaacaatttt |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
54713517 |
tcaaaagggttgaaatctagtttataaatattgcaacaatttt |
54713475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 370 - 418
Target Start/End: Complemental strand, 54679886 - 54679839
Alignment:
| Q |
370 |
taccaatcaaaagggttgaaatctagtttataaatattgcaacaatttt |
418 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| ||||||| |||||| |
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| T |
54679886 |
taccaatcaaaagg-ttgaaatctagtttataaaaattgcaataatttt |
54679839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 66
Target Start/End: Complemental strand, 54726683 - 54726626
Alignment:
| Q |
12 |
tagtttaaccgtgtgggaagcatgcatggcgttaaa---tatgatggttaattaattg |
66 |
Q |
| |
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||||||||||||||||||||||||||||| || ||| ||||| ||||||||||||| |
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| T |
54726683 |
tagtttaaccgtgtgggaagcatgcatggtgtcaaatactatgaaggttaattaattg |
54726626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 105; Significance: 4e-52; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 421 - 663
Target Start/End: Original strand, 32971718 - 32971957
Alignment:
| Q |
421 |
gagtggttatacatgaacaaccaccttatatggctaccactctttgtacaccttccacatgtctaaaaaatatataaaataatcttatgaaagtgccatc |
520 |
Q |
| |
|
|||||||||||||||||| || | ||| |||||||||||||||||||||||| ||||||||||| ||| |||| |||||||||||||||||||||| | |
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| T |
32971718 |
gagtggttatacatgaac---catcctatgtggctaccactctttgtacacctttcacatgtctaagaaaaatat-aaataatcttatgaaagtgccagc |
32971813 |
T |
|
| Q |
521 |
tcataaaagaagacnnnnnnnnnttaagtcccaaccctcagcttctctaaaaacgga--tctcttctctctccccaccaccatccattgccatcgccgca |
618 |
Q |
| |
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|||||||||||||| ||||||||||||||| |||||||||||||| || ||||||||||||||| ||| ||||||| ||||| ||||||| |
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| T |
32971814 |
tcataaaagaagacaaaaaaaaattaagtcccaaccct-tgcttctctaaaaacagatctctcttctctctcccaaccgccatccactgccaccgccgca |
32971912 |
T |
|
| Q |
619 |
aactccgaccatcctttcgtcccagctccgatttcaacaactcaa |
663 |
Q |
| |
|
||||||||||| || | || |||| |||||||||||||||||||| |
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|
| T |
32971913 |
aactccgaccacccctccgccccaactccgatttcaacaactcaa |
32971957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 97; Significance: 3e-47; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 421 - 663
Target Start/End: Complemental strand, 41665254 - 41665006
Alignment:
| Q |
421 |
gagtggttatacatgaacaaccaccttatatggctaccactctttgtacaccttccacatgtctaa-aaaatatataaaataatcttatgaaagtgccat |
519 |
Q |
| |
|
|||||||||||||||||| || | ||| |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| || |
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|
| T |
41665254 |
gagtggttatacatgaac---catcctatgtggctaccactctttgtacaccttccacatgtctaaaaaaaaatataaaataatcttatgaaagtgtcag |
41665158 |
T |
|
| Q |
520 |
ctcataaaagaagac-------nnnnnnnnnttaagtcccaaccctcagcttctctaaaaacggatctct-tctctctccccaccaccatccattgccat |
611 |
Q |
| |
|
||||||||||||||| |||||||| ||||||| |||||||||||||| ||||||| | |||||||||||| ||||||| ||||| |
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|
| T |
41665157 |
ctcataaaagaagacaaaaaaaaataaaaaattaagtcctaaccctccgcttctctaaaaacagatctctctttctctccccaccgccatccactgccac |
41665058 |
T |
|
| Q |
612 |
cgccgcaaactccgaccatcctttcgtcccagctccgatttcaacaactcaa |
663 |
Q |
| |
|
||||||||||||||||| || | || ||||||||||||||||||||||||| |
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|
| T |
41665057 |
tgccgcaaactccgaccacccctccgccccagctccgatttcaacaactcaa |
41665006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 66
Target Start/End: Complemental strand, 5302549 - 5302492
Alignment:
| Q |
12 |
tagtttaaccgtgtgggaagcatgcatggcgttaaa---tatgatggttaattaattg |
66 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||| ||||| ||||||||||||| |
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|
| T |
5302549 |
tagtttaaccgtgtgggaagcatgcatggtgtaaaatactatgaaggttaattaattg |
5302492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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