View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20264_low_15 (Length: 364)

Name: NF20264_low_15
Description: NF20264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20264_low_15
NF20264_low_15
[»] chr2 (15 HSPs)
chr2 (13-357)||(8379861-8380205)
chr2 (19-209)||(30383977-30384167)
chr2 (19-212)||(23767698-23767891)
chr2 (19-212)||(23784188-23784381)
chr2 (19-162)||(30394106-30394249)
chr2 (39-212)||(23796887-23797060)
chr2 (23-145)||(30424153-30424275)
chr2 (19-162)||(30436400-30436543)
chr2 (19-162)||(30468142-30468285)
chr2 (19-162)||(30475271-30475414)
chr2 (27-162)||(30482882-30483017)
chr2 (23-145)||(30430186-30430308)
chr2 (253-309)||(23767922-23767978)
chr2 (253-309)||(23797099-23797156)
chr2 (253-306)||(23784096-23784149)
[»] chr5 (1 HSPs)
chr5 (19-162)||(41628323-41628466)
[»] chr8 (2 HSPs)
chr8 (18-124)||(15852929-15853035)
chr8 (18-124)||(15860290-15860396)


Alignment Details
Target: chr2 (Bit Score: 317; Significance: 1e-179; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 13 - 357
Target Start/End: Complemental strand, 8380205 - 8379861
Alignment:
Q  13 tcaacattgtcttcagatggatcaggtgaaatagacatatggccttccctacagaatttgacaagtgatgttatttctcgaaacgcatttggaagtagtt 112  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8380205 tcaacgttgtcatcagatggatcaggtgaaatagacatatggccttccctacagaatttgacaagtgatgttatttctcgaaacgcatttggaagtagtt 8380106  T
Q  113 acgaagaaggaaaaagaatatttgatcttcaaagagagcaaggtgaacttgttatgaaaaatctagtgaaatctttaatccctttatggaggtaagacta 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8380105 acgaagaaggaaaaagaatatttgatcttcaaagagagcaaggtgaacttgttatgaaaaatctagtgaaatctttaatccctttatggaggtaagacta 8380006  T
Q  213 atgttcatatcataatttctatcattacttcaaaaattttactaagaggctagttttacatgactactatttttacttgtaggtttatacctacagcaac 312  Q
    ||||||||||||||||||||||||||||||||| | |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  8380005 atgttcatatcataatttctatcattacttcaagatttttaaaaagaggctagttttacatgactactatttttacttgtaggtttatacctacagctac 8379906  T
Q  313 tcaaaggaggatgcatgaaattgaaaaagatatagattcttctct 357  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  8379905 tcaaaggaggatgcatgaaattgaaaaagatatagattcttctct 8379861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 19 - 209
Target Start/End: Original strand, 30383977 - 30384167
Alignment:
Q  19 ttgtcttcagatggatcaggtgaaatagacatatggccttccctacagaatttgacaagtgatgttatttctcgaaacgcatttggaagtagttacgaag 118  Q
    |||||||||||||||||| |||||||||| |||||||||||||| || |||||| ||||||||| ||||||||||| ||||||||||||||| || ||||    
T  30383977 ttgtcttcagatggatcatgtgaaatagatatatggccttccctgcaaaatttggcaagtgatgctatttctcgaaccgcatttggaagtagctatgaag 30384076  T
Q  119 aaggaaaaagaatatttgatcttcaaagagagcaaggtgaacttgttatgaaaaatctagtgaaatctttaatccctttatggaggtaaga 209  Q
    ||||||||||||||||| | |||||||||||||||| ||||||| |  |||||  | ||  ||||||| | ||||||||||||| ||||||    
T  30384077 aaggaaaaagaatatttcaacttcaaagagagcaagctgaacttatagtgaaagttgtaacgaaatctatcatccctttatggatgtaaga 30384167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 19 - 212
Target Start/End: Original strand, 23767698 - 23767891
Alignment:
Q  19 ttgtcttcagatggatcaggtgaaatagacatatggccttccctacagaatttgacaagtgatgttatttctcgaaacgcatttggaagtagttacgaag 118  Q
    ||||||||| |||||||   |||||||||||||||||||||||| ||||  |||||||||||||||||  ||||     |||||||||||||||| ||||    
T  23767698 ttgtcttcaaatggatcctctgaaatagacatatggccttcccttcagagcttgacaagtgatgttatcgctcgttcgtcatttggaagtagttatgaag 23767797  T
Q  119 aaggaaaaagaatatttgatcttcaaagagagcaaggtgaacttgttatgaaaaatctagtgaaatctttaatccctttatggaggtaagacta 212  Q
    |||||| || | ||||| | ||||||| |||||||||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||||    
T  23767798 aaggaagaaaagtatttcaacttcaaatagagcaaggtgaacttataatgaaaaatctaatgaaatctttaatccctttatggaggtaagacta 23767891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 19 - 212
Target Start/End: Complemental strand, 23784381 - 23784188
Alignment:
Q  19 ttgtcttcagatggatcaggtgaaatagacatatggccttccctacagaatttgacaagtgatgttatttctcgaaacgcatttggaagtagttacgaag 118  Q
    ||||||||| |||||||| ||||||| ||| ||||||||||||| ||||  |||||||||||||||||  ||||     |||||||||||||||| ||||    
T  23784381 ttgtcttcaaatggatcatgtgaaatggacgtatggccttcccttcagagcttgacaagtgatgttatcgctcgttcgtcatttggaagtagttatgaag 23784282  T
Q  119 aaggaaaaagaatatttgatcttcaaagagagcaaggtgaacttgttatgaaaaatctagtgaaatctttaatccctttatggaggtaagacta 212  Q
    |||||| || | ||||| | ||||||| |||||||||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||||    
T  23784281 aaggaagaaaagtatttcaacttcaaatagagcaaggtgaacttataatgaaaaatctaatgaaatctttaatccctttatggaggtaagacta 23784188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 19 - 162
Target Start/End: Original strand, 30394106 - 30394249
Alignment:
Q  19 ttgtcttcagatggatcaggtgaaatagacatatggccttccctacagaatttgacaagtgatgttatttctcgaaacgcatttggaagtagttacgaag 118  Q
    |||||||||||||||||| ||||||||||| ||||||||||||| ||||||||| ||||||||| |||||||||||  || |||||||||||||| ||||    
T  30394106 ttgtcttcagatggatcatgtgaaatagacgtatggccttccctgcagaatttggcaagtgatgctatttctcgaactgcgtttggaagtagttatgaag 30394205  T
Q  119 aaggaaaaagaatatttgatcttcaaagagagcaaggtgaactt 162  Q
    ||||||||||||||||| | |||||||||||||||| |||||||    
T  30394206 aaggaaaaagaatatttcaacttcaaagagagcaagctgaactt 30394249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 39 - 212
Target Start/End: Original strand, 23796887 - 23797060
Alignment:
Q  39 tgaaatagacatatggccttccctacagaatttgacaagtgatgttatttctcgaaacgcatttggaagtagttacgaagaaggaaaaagaatatttgat 138  Q
    |||||||||||||||||||||||| ||||  |||||||||||||||||  ||||     |||||||||||||||| |||||||||| || | ||||| |     
T  23796887 tgaaatagacatatggccttcccttcagagcttgacaagtgatgttatcgctcgttcgtcatttggaagtagttatgaagaaggaagaaaagtatttcaa 23796986  T
Q  139 cttcaaagagagcaaggtgaacttgttatgaaaaatctagtgaaatctttaatccctttatggaggtaagacta 212  Q
    ||||||| |||||||||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||||    
T  23796987 cttcaaatagagcaaggtgaacttataatgaaaaatctaatgaaatctttaatccctttatggaggtaagacta 23797060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 23 - 145
Target Start/End: Original strand, 30424153 - 30424275
Alignment:
Q  23 cttcagatggatcaggtgaaatagacatatggccttccctacagaatttgacaagtgatgttatttctcgaaacgcatttggaagtagttacgaagaagg 122  Q
    |||||||||||||| ||||||| ||| ||||||||| ||| || |||||| | ||||||||||||||||||   ||||||||||||||||| ||||| ||    
T  30424153 cttcagatggatcatgtgaaatggacgtatggcctttccttcaaaatttggcgagtgatgttatttctcgagctgcatttggaagtagttatgaagaggg 30424252  T
Q  123 aaaaagaatatttgatcttcaaa 145  Q
    ||||||||||||| | |||||||    
T  30424253 aaaaagaatatttcaacttcaaa 30424275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 19 - 162
Target Start/End: Original strand, 30436400 - 30436543
Alignment:
Q  19 ttgtcttcagatggatcaggtgaaatagacatatggccttccctacagaatttgacaagtgatgttatttctcgaaacgcatttggaagtagttacgaag 118  Q
    ||||| |||||||||||| ||||||| ||| ||||||||| ||| || |||||| | |||||| |||||||||||   || |||||||||||||| ||||    
T  30436400 ttgtcgtcagatggatcatgtgaaatggacgtatggcctttccttcaaaatttggccagtgatcttatttctcgagcagcgtttggaagtagttatgaag 30436499  T
Q  119 aaggaaaaagaatatttgatcttcaaagagagcaaggtgaactt 162  Q
    | ||||||||||||||| | |||||||  || |||| |||||||    
T  30436500 agggaaaaagaatatttcaacttcaaaccgaacaagctgaactt 30436543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 19 - 162
Target Start/End: Original strand, 30468142 - 30468285
Alignment:
Q  19 ttgtcttcagatggatcaggtgaaatagacatatggccttccctacagaatttgacaagtgatgttatttctcgaaacgcatttggaagtagttacgaag 118  Q
    ||||| |||||||||||| ||||||| ||| ||||||||| ||| || |||||  | ||||||||||||||||||   || |||||||||||||| ||||    
T  30468142 ttgtcgtcagatggatcatgtgaaatggacgtatggcctttccttcaaaattttgccagtgatgttatttctcgagcagcgtttggaagtagttatgaag 30468241  T
Q  119 aaggaaaaagaatatttgatcttcaaagagagcaaggtgaactt 162  Q
    | ||||||||||||||| | |||||||  || |||| |||||||    
T  30468242 agggaaaaagaatatttcaacttcaaaccgaacaagctgaactt 30468285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 19 - 162
Target Start/End: Original strand, 30475271 - 30475414
Alignment:
Q  19 ttgtcttcagatggatcaggtgaaatagacatatggccttccctacagaatttgacaagtgatgttatttctcgaaacgcatttggaagtagttacgaag 118  Q
    ||||| |||||||||||| ||||| | ||  | ||||||| ||| || |||||| | ||||||||||||||| |||  ||||||||||||||||| ||||    
T  30475271 ttgtcatcagatggatcatgtgaattggatgtttggcctttccttcaaaatttggcgagtgatgttatttctagaacagcatttggaagtagttatgaag 30475370  T
Q  119 aaggaaaaagaatatttgatcttcaaagagagcaaggtgaactt 162  Q
    | ||||||||||||||| | |||||||  ||||||| |||||||    
T  30475371 agggaaaaagaatatttcaacttcaaatcgagcaagctgaactt 30475414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 27 - 162
Target Start/End: Original strand, 30482882 - 30483017
Alignment:
Q  27 agatggatcaggtgaaatagacatatggccttccctacagaatttgacaagtgatgttatttctcgaaacgcatttggaagtagttacgaagaaggaaaa 126  Q
    |||||||||| ||||||| ||  ||||||||||| | || |||||| | |||||||||||| ||||||  ||||||||||||||||| |||||||||| |    
T  30482882 agatggatcatgtgaaattgatgtatggccttccattcaaaatttggctagtgatgttattgctcgaacagcatttggaagtagttatgaagaaggaata 30482981  T
Q  127 agaatatttgatcttcaaagagagcaaggtgaactt 162  Q
    | ||||||| | |||||||  ||||||| |||||||    
T  30482982 aaaatatttcaacttcaaaaggagcaagctgaactt 30483017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 23 - 145
Target Start/End: Original strand, 30430186 - 30430308
Alignment:
Q  23 cttcagatggatcaggtgaaatagacatatggccttccctacagaatttgacaagtgatgttatttctcgaaacgcatttggaagtagttacgaagaagg 122  Q
    |||||||||||||| ||||||| ||  ||||||||| ||| || |||||  |||| |||||||||||||||   ||||||||||||||||| ||||| ||    
T  30430186 cttcagatggatcatgtgaaatggaagtatggcctttccttcaaaatttagcaagagatgttatttctcgagctgcatttggaagtagttatgaagaggg 30430285  T
Q  123 aaaaagaatatttgatcttcaaa 145  Q
    ||||||||||||| | |||||||    
T  30430286 aaaaagaatatttcaacttcaaa 30430308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 253 - 309
Target Start/End: Original strand, 23767922 - 23767978
Alignment:
Q  253 actaagaggctagttttacatgactactatttttacttgtaggtttatacctacagc 309  Q
    ||||||| |||||||||||||||||| | |||||||||| |||||| ||||||||||    
T  23767922 actaagatgctagttttacatgactattctttttacttgcaggtttttacctacagc 23767978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 253 - 309
Target Start/End: Original strand, 23797099 - 23797156
Alignment:
Q  253 actaagaggctagttttacatgactactatttt-tacttgtaggtttatacctacagc 309  Q
    ||||||| |||||||||||||||||| | |||| ||||||||||||| ||||||||||    
T  23797099 actaagatgctagttttacatgactattcttttttacttgtaggtttttacctacagc 23797156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 306
Target Start/End: Complemental strand, 23784149 - 23784096
Alignment:
Q  253 actaagaggctagttttacatgactactatttttacttgtaggtttatacctac 306  Q
    ||||||| | |||||||||||||||| | |||||||||| |||||| |||||||    
T  23784149 actaagatgttagttttacatgactattctttttacttgcaggtttttacctac 23784096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 19 - 162
Target Start/End: Complemental strand, 41628466 - 41628323
Alignment:
Q  19 ttgtcttcagatggatcaggtgaaatagacatatggccttccctacagaatttgacaagtgatgttatttctcgaaacgcatttggaagtagttacgaag 118  Q
    |||||| ||||||||||| |||||||||| |||||||||||||| ||||||||| | |||||||||||||||||||   |||| ||||||||||| ||||    
T  41628466 ttgtctccagatggatcatgtgaaatagatatatggccttcccttcagaatttggcgagtgatgttatttctcgaacaacattcggaagtagttatgaag 41628367  T
Q  119 aaggaaaaagaatatttgatcttcaaagagagcaaggtgaactt 162  Q
    |||||| |||||||||| | |||||||  ||||||| |||||||    
T  41628366 aaggaagaagaatatttcaacttcaaattgagcaagctgaactt 41628323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 124
Target Start/End: Complemental strand, 15853035 - 15852929
Alignment:
Q  18 attgtcttcagatggatcaggtgaaatagacatatggccttccctacagaatttgacaagtgatgttatttctcgaaacgcatttggaagtagttacgaa 117  Q
    |||||| ||||||||| || |||| || ||  | ||||||| ||| |||||||||||  ||||||| |||||||| |  ||||||||||| || |||| |    
T  15853035 attgtcatcagatggaacatgtgagattgatgtttggcctttccttcagaatttgacgtgtgatgtaatttctcggacagcatttggaagcagctacgca 15852936  T
Q  118 gaaggaa 124  Q
    |||||||    
T  15852935 gaaggaa 15852929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 124
Target Start/End: Complemental strand, 15860396 - 15860290
Alignment:
Q  18 attgtcttcagatggatcaggtgaaatagacatatggccttccctacagaatttgacaagtgatgttatttctcgaaacgcatttggaagtagttacgaa 117  Q
    |||||| ||||||||| || |||| || ||  | ||||||||||| |||||||| ||  ||||||| |||||||| |  ||||||||||| || |||| |    
T  15860396 attgtcatcagatggaacatgtgagattgatgtttggccttcccttcagaattttacctgtgatgtaatttctcggacagcatttggaagcagctacgca 15860297  T
Q  118 gaaggaa 124  Q
    |||||||    
T  15860296 gaaggaa 15860290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University