View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20264_low_19 (Length: 333)
Name: NF20264_low_19
Description: NF20264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20264_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 141; Significance: 7e-74; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 19 - 203
Target Start/End: Original strand, 50252744 - 50252929
Alignment:
| Q |
19 |
atgatatgatacttcatgacaaattagttcttcctcnnnnnnncaagttctcgaacaatcagtgttctcctattgtcagtttacaatcattgg-tttaac |
117 |
Q |
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| T |
50252744 |
atgatatgatacttcatgacaaattagttcttcctcttttttttaagttctcgaacaatcagtgttctcctattgtcagtttacaatcattgggtttaac |
50252843 |
T |
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| Q |
118 |
gcgtctgaaaattccagcttgtttatattatgaatggtgttggaatcctaagaaatggtttagtagatagaggtggggtctccata |
203 |
Q |
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| T |
50252844 |
gtgtctgaaaattccagcttgtttatattataaatggtgttggaatcctaagaaatgttttagtagatagaggtggggtctccata |
50252929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 263 - 323
Target Start/End: Original strand, 50252974 - 50253034
Alignment:
| Q |
263 |
aggggcagtgagcagttgctgttgatataaccactgatgcagtccgagttttgagcctttg |
323 |
Q |
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| T |
50252974 |
aggggcagtgaacagttgctgctgctataaccactgatgcagtccgagttttgagcctttg |
50253034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 123 - 167
Target Start/End: Original strand, 25355690 - 25355734
Alignment:
| Q |
123 |
tgaaaattccagcttgtttatattatgaatggtgttggaatccta |
167 |
Q |
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| T |
25355690 |
tgaaaatttcaacttgtttgtactatgaatggtgttggaatccta |
25355734 |
T |
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