View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20264_low_2 (Length: 654)
Name: NF20264_low_2
Description: NF20264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20264_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 509; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 42 - 598
Target Start/End: Original strand, 43101663 - 43102227
Alignment:
| Q |
42 |
atatattaatttgtatcataaaaacatttttcaaaaaatataaattgtatcatacaaacaatcaatttgacagaagacaatgtctcaagtaaattctctc |
141 |
Q |
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| T |
43101663 |
atatattaatttgtatcataaaaacatttttcaaaaaatataaattgtatcatacaaacaatcaatttgacagaagacaatgtctcaagtaaattctctc |
43101762 |
T |
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| Q |
142 |
tcaacaactcattttcacgcaatcaacaatagccatcacattaagcatgcataggtgggaaa----------attttgaaaattggagaccgaaaccagg |
231 |
Q |
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| T |
43101763 |
tcaacaactcattttcacgcaatcaacaatagccatcacattaagcatgcataggtgggaaattttttaaatattttgaaaattggagaccgaaaccagg |
43101862 |
T |
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| Q |
232 |
aatctaaaaatagtagccaattgatatatctttcaaactaaacttgatctaatggtgtaaaagtgcacaaccaacagacccttcatccagagagagtaaa |
331 |
Q |
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| T |
43101863 |
aatctaaaaatagtagccatttgatatatctttcaaactaaacttgatctaatggtgtaaaagtgcacaaccaacagacccttcatccagag--agtaaa |
43101960 |
T |
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| Q |
332 |
tgttaaaagacaactacctcttgatgcaacattatcctgaaaagctgtaaatgaaataagaccaactttttacaatgaccgaagtaacaggaacctcagt |
431 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
43101961 |
tgttaaaagacaactacctcttgatgcaacattatcctgaaaagctgtaaatgaaataagaccaactttttacaatgaccgaagtaacagaaacctcagt |
43102060 |
T |
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| Q |
432 |
gaaatgattctagaagaaaaatgtcaagtaaaagagcaaatggaaaggaccatgtcaaacaatcccagattatcccatcttcaatgggaggacaacatgc |
531 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
43102061 |
gaaatgattctagaagaaaaatgtcaagtaaaagagcaaatggaaaggaccatgtcaaacaatcccagattatcccatcttcaatgggaggactacatgc |
43102160 |
T |
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| Q |
532 |
cctgggtagtttagctagacatctggggcagaggaatcaaatgatggtagaagccaccccttggtct |
598 |
Q |
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| T |
43102161 |
cctgggtagtttagctagacatctggggcagaggaatcaaatgatggtagaagccaccccttggtct |
43102227 |
T |
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