View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20264_low_21 (Length: 320)

Name: NF20264_low_21
Description: NF20264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20264_low_21
NF20264_low_21
[»] chr2 (2 HSPs)
chr2 (22-300)||(7190387-7190665)
chr2 (22-285)||(13809998-13810269)
[»] chr1 (3 HSPs)
chr1 (33-300)||(33332768-33333035)
chr1 (33-300)||(2939004-2939276)
chr1 (22-285)||(46015273-46015543)
[»] chr4 (1 HSPs)
chr4 (22-285)||(11038950-11039219)
[»] chr7 (2 HSPs)
chr7 (22-254)||(45087505-45087737)
chr7 (260-300)||(45087481-45087521)
[»] scaffold0029 (1 HSPs)
scaffold0029 (64-296)||(71226-71458)
[»] chr8 (5 HSPs)
chr8 (22-285)||(9311394-9311663)
chr8 (26-284)||(14816940-14817205)
chr8 (26-284)||(14828534-14828800)
chr8 (26-104)||(14817253-14817328)
chr8 (26-104)||(14828411-14828486)
[»] chr5 (1 HSPs)
chr5 (33-285)||(19718096-19718353)
[»] chr6 (2 HSPs)
chr6 (119-239)||(269754-269874)
chr6 (113-168)||(20488856-20488911)
[»] chr3 (1 HSPs)
chr3 (242-285)||(39992136-39992179)


Alignment Details
Target: chr2 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 22 - 300
Target Start/End: Complemental strand, 7190665 - 7190387
Alignment:
Q  22 gcttaaagaataacaacaacgagaaaatcacacccatagttatggatctgctgaattgtctctcctttgaaattttcgaagaannnnnnnnggggaaatt 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||        || ||||||    
T  7190665 gcttaaagaataacaacaacgagaaaatcacacccatagttatggatctgctgaactgtctctcctttgaaattttcgaagaaatttttttggagaaatt 7190566  T
Q  122 gatgaatgggtctaagatttgtgttttttagctaccatttattgattttgttcttggttttgaataatatgaaagaaagttcaaaaatttgggattattg 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||  |||||||||||||||||    
T  7190565 gatgaatgggtctaagatttgtgttttttagctaccatttattgattttattcttggttttgaataatatgaaagaaagtttgaaaatttgggattattg 7190466  T
Q  222 tgaaatgggtttgaaattgccgttgttgcaaaaagtgtttgttgttgttgcaaaaactttggattttcttttatgggtt 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7190465 tgaaatgggtttgaaattgccgttgttgcaaaaagtgtttgttgttgttgcaaaaactttggattttcttttatgggtt 7190387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 22 - 285
Target Start/End: Original strand, 13809998 - 13810269
Alignment:
Q  22 gcttaaagaataacaacaacgagaaaatcacacccatagttatggatctgctgaattgtctctcctttgaaattttcgaagaannnnnnnnggggaaatt 121  Q
    |||||||||| ||||||||| | |||||||||||||||||||||||||||   || |||||||||||||||||||||||||||        |||| ||||    
T  13809998 gcttaaagaacaacaacaacaacaaaatcacacccatagttatggatctg---aactgtctctcctttgaaattttcgaagaaaaaaaattgggggaatt 13810094  T
Q  122 gatgaatgggtctaagatttgtgttttttagctaccatttattgattttgttcttggttttgaataatatgaaagaaagttca-aaaatttgggattatt 220  Q
    ||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| | ||||||||||||||||    
T  13810095 gatgaatgggtctgagatttgtgttttttagctaccatttattcattttgttattggttttgaataatatgaaagaaagtttagaaaatttgggattatt 13810194  T
Q  221 gtgaaatgggtttgaaattgc----------cgttgttgcaaaaagtgtttgttgttgttgcaaaaactttggat 285  Q
    ||||||||||| |||||||||          |||||||||||||| ||||| |||||||||||||||||||||||    
T  13810195 gtgaaatgggtctgaaattgctgttgtttgacgttgttgcaaaaattgttttttgttgttgcaaaaactttggat 13810269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 33 - 300
Target Start/End: Original strand, 33332768 - 33333035
Alignment:
Q  33 aacaacaacgagaaaatcacacccatagttatggatctgctgaattgtctctcctttgaaattttcgaagaannnnnnnnggggaaattgatgaatgggt 132  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||||        ||||||||||||||||||||    
T  33332768 aacaacaacgagaaaatcacacctatagttatggatctgctgaactgtctctccttttaaattttcgaagaattttttttggggaaattgatgaatgggt 33332867  T
Q  133 ctaagatttgtgttttttagctaccatttattgattttgttcttggttttgaataatatgaaagaaagttcaaaaatttgggattattgtgaaatgggtt 232  Q
    || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||||||||| |     
T  33332868 ctgagatttgtgttttttagctaccatttattaattttgttcttggttttgaataatatgaaagaaagtttgaaagtttgggattattgtgaaatggatc 33332967  T
Q  233 tgaaattgccgttgttgcaaaaagtgtttgttgttgttgcaaaaactttggattttcttttatgggtt 300  Q
    ||||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||    
T  33332968 tgaaattgctgttgttgcaaaaattgtttgttgttgttgcaaaagctttggattttcttttatgggtt 33333035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 33 - 300
Target Start/End: Complemental strand, 2939276 - 2939004
Alignment:
Q  33 aacaacaacgagaaaatcacacccatagttatggatctgctga---attgtctctcctttgaaattttcgaagaannnnnnnn--ggggaaattgatgaa 127  Q
    |||||||||||||||||||||||||||||||||||||| ||||   | ||||||||||||||||||||||||| |          |||| ||||||||||    
T  2939276 aacaacaacgagaaaatcacacccatagttatggatctactgatgaactgtctctcctttgaaattttcgaagtaatttttttttgggggaattgatgaa 2939177  T
Q  128 tgggtctaagatttgtgttttttagctaccatttattgattttgttcttggttttgaataatatgaaagaaagttcaaaaatttgggattattgtgaaat 227  Q
    ||||||  |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||  |||||||||||||||||| ||||    
T  2939176 tgggtcagagatttgtgttttttagctaccatttattgatttcgttcttggttttgaataatatgaaagaaagtttgaaaatttgggattattgttaaat 2939077  T
Q  228 gggtttgaaattgccgttgttgcaaaaagtgtttgttgttgttgcaaaaactttggattttcttttatgggtt 300  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  2939076 gggtctgaaattgccgttgttgcaaaaattgtttgttgttgttgcaaaaactttggattttcttttatgggtt 2939004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 22 - 285
Target Start/End: Original strand, 46015273 - 46015543
Alignment:
Q  22 gcttaaagaataacaacaacgagaaaatcacacccatagttatggatctgctgaattgtctctcctttgaaattttcgaagaannnnnnnnggggaaatt 121  Q
    |||||||||| |||||| |||| |||||||||||||||||||||||||||   || |||||||||||||||||||||||||||        |||| ||||    
T  46015273 gcttaaagaacaacaacgacgacaaaatcacacccatagttatggatctg---aactgtctctcctttgaaattttcgaagaaaaaaaattgggggaatt 46015369  T
Q  122 gatgaatgggtctaagatttgtgttttttagctaccatttattgattttgttcttggttttgaataatatgaaagaaagttcaaaaatttgggattattg 221  Q
    ||| ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||  ||||||||| |||||||    
T  46015370 gattaatgggtctgagatttgtgttttttagctaccatttattcattttgttcttggttttgaataatatgaaagaaagtttgaaaatttggaattattg 46015469  T
Q  222 tgaaatgggtttgaaattgc----------cgttgttgcaaaaagtgtttgttgttgttgcaaaaactttggat 285  Q
    |||||||||| |||||||||          |||||||||||||| |||||||||||||||||||||||||||||    
T  46015470 tgaaatgggtctgaaattgctgttgtttgacgttgttgcaaaaattgtttgttgttgttgcaaaaactttggat 46015543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 22 - 285
Target Start/End: Complemental strand, 11039219 - 11038950
Alignment:
Q  22 gcttaaagaataacaacaacgagaaaatcacacccatagttatggatctgctgaattgtctctcctttgaaattttcgaagaannnnnnnnggggaaatt 121  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||   || |||||||||||| ||||||||||||||        |||||| ||    
T  11039219 gcttaaagaataacaacaacgacaaaatcacacccatagttatggatctg---aactgtctctccttttaaattttcgaagaaaaaaatagggggaa-tt 11039124  T
Q  122 gatgaatgggtctaagatttgtgttttttagctaccatttattgattttgttcttggttttgaataatatgaaagaaagttcaaaaatttgggattattg 221  Q
    ||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  11039123 gatgaattggtctgagatttgtgttttttagctaccatttattcattttgttcttggttttgaataatatgaaagaaagtttgaaaatttgggattattg 11039024  T
Q  222 tgaaatgggtttgaaattgc----------cgttgttgcaaaaagtgtttgttgttgttgcaaaaactttggat 285  Q
    ||||||||||||||||||||          |||||||||||||| |||||||||||||||||||||||||||||    
T  11039023 tgaaatgggtttgaaattgctgttgtttgacgttgttgcaaaaattgtttgttgttgttgcaaaaactttggat 11038950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 153; Significance: 4e-81; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 22 - 254
Target Start/End: Complemental strand, 45087737 - 45087505
Alignment:
Q  22 gcttaaagaataacaacaacgagaaaatcacacccatagttatggatctgctgaattgtctctcctttgaaattttcgaagaannnnnnnnggggaaatt 121  Q
    |||||||| | |||||||||||||||||||||||||| ||||||||||||| ||| ||||| |||||| ||||||||||||||        |||||||||    
T  45087737 gcttaaaggacaacaacaacgagaaaatcacacccattgttatggatctgcggaactgtctttccttttaaattttcgaagaattttttttggggaaatt 45087638  T
Q  122 gatgaatgggtctaagatttgtgttttttagctaccatttattgattttgttcttggttttgaataatatgaaagaaagttcaaaaatttgggattattg 221  Q
    ||||||||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  45087637 gatgaatgggtctgagatttttgttttttagctaccatttattaattttgttcttggttttgaataatatgaaagaaagtttaaaaatttgggattattg 45087538  T
Q  222 tgaaatgggtttgaaattgccgttgttgcaaaa 254  Q
    |||||||||| ||||||||  ||||||||||||    
T  45087537 tgaaatgggtctgaaattgttgttgttgcaaaa 45087505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 260 - 300
Target Start/End: Complemental strand, 45087521 - 45087481
Alignment:
Q  260 ttgttgttgttgcaaaaactttggattttcttttatgggtt 300  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  45087521 ttgttgttgttgcaaaagctttggattttcttttatgggtt 45087481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 145; Significance: 3e-76; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 64 - 296
Target Start/End: Original strand, 71226 - 71458
Alignment:
Q  64 tggatctgctgaattgtctctcctttgaaattttcgaagaannnnnnnnggggaaattgatgaatgggtctaagatttgtgttttttagctaccatttat 163  Q
    ||||| ||||||| |||||||||||||||||||| ||||||        |||| ||||||||||||||||| ||||||||||||||||||||||||||||    
T  71226 tggatatgctgaactgtctctcctttgaaatttttgaagaatttattttgggggaattgatgaatgggtctgagatttgtgttttttagctaccatttat 71325  T
Q  164 tgattttgttcttggttttgaataatatgaaagaaagttcaaaaatttgggattattgtgaaatgggtttgaaattgccgttgttgcaaaaagtgtttgt 263  Q
    | |||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||| |||| ||||||||  ||||||||||||| |||||||    
T  71326 ttattttgttcttggttttgaatagtatgaaagaaagttgaaaaatttaggattattgtgaaaagggtctgaaattgttgttgttgcaaaaattgtttgt 71425  T
Q  264 tgttgttgcaaaaactttggattttcttttatg 296  Q
    ||||||| |||||| ||||||||||||||||||    
T  71426 tgttgtttcaaaaattttggattttcttttatg 71458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 145; Significance: 3e-76; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 22 - 285
Target Start/End: Complemental strand, 9311663 - 9311394
Alignment:
Q  22 gcttaaagaataacaacaacgagaaaatcacacccatagttatggatctgctgaattgtctctcctttgaaattttcgaagaannnnnnnnggggaaatt 121  Q
    |||||||||| ||||||||||| |||||||||||||||||||||||||||   || | ||  |||||||||||||||||||||        |||||| ||    
T  9311663 gcttaaagaacaacaacaacgacaaaatcacacccatagttatggatctg---aactttccttcctttgaaattttcgaagaaaaaaattgggggaa-tt 9311568  T
Q  122 gatgaatgggtctaagatttgtgttttttagctaccatttattgattttgttcttggttttgaataatatgaaagaaagttcaaaaatttgggattattg 221  Q
    ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  9311567 gatgaatgggtctgagatttgtgttttttagctaccatttattcattttgttcttggttttgaataatatgaaagaaagtttgaaaatttgggattattg 9311468  T
Q  222 tgaaatgggtttgaaattgc----------cgttgttgcaaaaagtgtttgttgttgttgcaaaaactttggat 285  Q
    |||||||||| |||||||||          |||||||||||||| |||||||||||||||||||||||||||||    
T  9311467 tgaaatgggtctgaaattgctgttgtttgacgttgttgcaaaaattgtttgttgttgttgcaaaaactttggat 9311394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 26 - 284
Target Start/End: Complemental strand, 14817205 - 14816940
Alignment:
Q  26 aaagaataacaacaacgagaaaatcacacccatagttatggatctgctgaattgtctctcctttgaaattttcgaagaannnnnnnnggggaaattgatg 125  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||   || |||||||||||||||||| ||||||||        || | ||||||||    
T  14817205 aaagaacaacaacaacgacaaaatcacacccatagttatggatctg---aactgtctctcctttgaaattgtcgaagaaaattttttggaggaattgatg 14817109  T
Q  126 aatgggtctaagatttgtgttttttagctaccatttattgattttgttcttggttttgaataatatgaaagaaagttcaaaaatttgggattattgtgaa 225  Q
    ||||||| | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||  |||| ||||||||||||||||    
T  14817108 aatgggtatgagatttgtgttttttagctaccatttattcattttgttcttggttttgaataatatgaaagaaagtttgaaaaattgggattattgtgaa 14817009  T
Q  226 atgggtttgaaattgc----------cgttgttgcaaaaagtgtttgttgttgttgcaaaaactttgga 284  Q
    |||||| |||||||||          |||||||||||||| ||||||||||||||||||||||||||||    
T  14817008 atgggtctgaaattgctgttgtttgacgttgttgcaaaaactgtttgttgttgttgcaaaaactttgga 14816940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 26 - 284
Target Start/End: Original strand, 14828534 - 14828800
Alignment:
Q  26 aaagaataacaacaacgagaaaatcacacccatagttatggatctgctgaattgtctctcctttgaaattttcgaagaannnnnnnnggggaaattgatg 125  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||   || |||||||||||||||||| ||||||||        || | ||||||||    
T  14828534 aaagaacaacaacaacgacaaaatcacacccatagttatggatctg---aactgtctctcctttgaaattgtcgaagaaaattttttggaggaattgatg 14828630  T
Q  126 aatgggtctaagatttgtgttttttagctaccatttattgattttgttcttggttttgaataatatgaaagaaagttcaaaaatttgggattattgtgaa 225  Q
    ||||||| | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||  |||| ||||||||||||||||    
T  14828631 aatgggtatgagatttgtgttttttagctaccatttattcattttgttcttggttttgaataatatgaaagaaagtttgaaaaattgggattattgtgaa 14828730  T
Q  226 atgggtttgaaa-----------ttgccgttgttgcaaaaagtgtttgttgttgttgcaaaaactttgga 284  Q
    |||||| |||||           ||| |||||||||||||| ||||||||||||||||||||||||||||    
T  14828731 atgggtctgaaaattgctgttgtttgacgttgttgcaaaaactgtttgttgttgttgcaaaaactttgga 14828800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 26 - 104
Target Start/End: Complemental strand, 14817328 - 14817253
Alignment:
Q  26 aaagaataacaacaacgagaaaatcacacccatagttatggatctgctgaattgtctctcctttgaaattttcgaagaa 104  Q
    |||||| ||||||  ||| ||||||||||||||||||||||||    |||| |||||||||||||||||| ||||||||    
T  14817328 aaagaacaacaacggcgacaaaatcacacccatagttatggat---atgaactgtctctcctttgaaattgtcgaagaa 14817253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 26 - 104
Target Start/End: Original strand, 14828411 - 14828486
Alignment:
Q  26 aaagaataacaacaacgagaaaatcacacccatagttatggatctgctgaattgtctctcctttgaaattttcgaagaa 104  Q
    |||||| ||||||  ||| ||||||||||||||||||||||||    |||| |||||||||||||||||| ||||||||    
T  14828411 aaagaacaacaacggcgacaaaatcacacccatagttatggat---atgaactgtctctcctttgaaattgtcgaagaa 14828486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 141; Significance: 6e-74; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 33 - 285
Target Start/End: Complemental strand, 19718353 - 19718096
Alignment:
Q  33 aacaacaacgagaaaatcacacccatagttatggatctgctgaattgtctctcctttgaaattttcgaagaannnnnnnnggggaaattgatgaatgggt 132  Q
    ||||||||||| |||||||||||||||||||||||||||   || |||||||||||||||||||||||||||        |||| |||||||||| ||||    
T  19718353 aacaacaacgacaaaatcacacccatagttatggatctg---aactgtctctcctttgaaattttcgaagaaaaaatt--gggggaattgatgaaagggt 19718259  T
Q  133 ctaagatttgtgttttttagctaccatttattgattttgttcttggttttgaataatatgaaagaaagttcaaaaatttgggattattgtgaaatgggtt 232  Q
     | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||     
T  19718258 ttgagatttgtgttttttagctaccatttattcattttgttcttggttttgaataatatgaaagaaagtttgaaaatttgggattattgtgaaatgggtc 19718159  T
Q  233 tgaaattgc----------cgttgttgcaaaaagtgtttgttgttgttgcaaaaactttggat 285  Q
    |||||||||          |||||||||||||| |||||||||||||||||||||||||||||    
T  19718158 tgaaattgctgttgtttgacgttgttgcaaaaattgtttgttgttgttgcaaaaactttggat 19718096  T

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Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 119 - 239
Target Start/End: Original strand, 269754 - 269874
Alignment:
Q  119 attgatgaatgggtctaagatttgtgttttttagctaccatttattgattttgttcttggttttgaataatatgaaagaaagttcaaaaatttgggatta 218  Q
    |||||| ||||||| | | |||||||||||| ||||||| ||||| ||||||| ||||| ||||||||| ||||||||||||||  |||||||||| |||    
T  269754 attgataaatgggtttgaaatttgtgtttttaagctaccctttatcgattttggtcttgattttgaatactatgaaagaaagtttgaaaatttggggtta 269853  T
Q  219 ttgtgaaatgggtttgaaatt 239  Q
    ||||||| ||||| |||||||    
T  269854 ttgtgaagtgggtctgaaatt 269874  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 113 - 168
Target Start/End: Original strand, 20488856 - 20488911
Alignment:
Q  113 ggggaaattgatgaatgggtctaagatttgtgttttttagctaccatttattgatt 168  Q
    |||| ||||||||||| ||||| ||||||||||||||||| || ||||||| ||||    
T  20488856 gggggaattgatgaatcggtctgagatttgtgttttttagttatcatttatcgatt 20488911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 242 - 285
Target Start/End: Original strand, 39992136 - 39992179
Alignment:
Q  242 cgttgttgcaaaaagtgtttgttgttgttgcaaaaactttggat 285  Q
    |||||||||||||| |||||||||||||||||||||||||||||    
T  39992136 cgttgttgcaaaaattgtttgttgttgttgcaaaaactttggat 39992179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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