View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20264_low_23 (Length: 311)

Name: NF20264_low_23
Description: NF20264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20264_low_23
NF20264_low_23
[»] chr8 (1 HSPs)
chr8 (17-302)||(29601568-29601861)


Alignment Details
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 17 - 302
Target Start/End: Complemental strand, 29601861 - 29601568
Alignment:
Q  17 acttcatgctcacctaacatcaaaatgaatatactacctaataccataaatttaggtaaagaaa----ataaac-catacaatcaaaaagatcaaaacgg 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    |||||  |||||||||||||||||||||||||    
T  29601861 acttcatgctcacctaacatcaaaatgaatatactacctaataccataaatttaggtaaaaaaataaaataaaatcatacaatcaaaaagatcaaaacgg 29601762  T
Q  112 ggagtgaaatggttggacattttac-atacca----ggtgattcaaaagaactattttaacatgtattatagacgagcatgatacatgagatgacataga 206  Q
    ||||||||||||||||||||||||| ||||||    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  29601761 ggagtgaaatggttggacattttaccataccacttaggtgattcaaaagaactattttaacatgtattatagacgagtatgatacatgagatgacataga 29601662  T
Q  207 tatcttttaacttgaccaaagtccagggaattggaatctatctaacacatacaacaacattaaaactcttacggagctcgagagattagtctctgc 302  Q
    |||||||||||||||| |||||||||||   | ||||||| || |||||| ||||||| |||||||||||||  ||||||||||||||||||||||    
T  29601661 tatcttttaacttgactaaagtccaggg--ctagaatctaccttacacatgcaacaacgttaaaactcttactcagctcgagagattagtctctgc 29601568  T

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