View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20264_low_26 (Length: 283)
Name: NF20264_low_26
Description: NF20264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20264_low_26 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 183; Significance: 5e-99; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 30932055 - 30931798
Alignment:
| Q |
1 |
taacaagacgtcataagaaaattaacaagcctgctgtgaagacaattcaagtatgttaaaaaa-tcttaaatcttcatattagaatattttatgaagtaa |
99 |
Q |
| |
|
||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
30932055 |
taacaagtcgtcttaagcaaattaacaagcctgctgtgaagacaattcaagtatgttaaaaaaatcttaaatcttcatattagaatattttatgaagtaa |
30931956 |
T |
|
| Q |
100 |
tattannnnnnnagggaaattctaatttttcattataaattatcttttttggataataatttgttgaagctaaacttagagtattttgtacttggattca |
199 |
Q |
| |
|
||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30931955 |
tattattt----agggtaattctaatttttcattataaattatcttttttggataataatttgttgaagctaaacttagagtattttgtacttggattca |
30931860 |
T |
|
| Q |
200 |
agtcattttagataactnnnnnnnttattccatcctagcatttataagaatttgaaactctca |
262 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
30931859 |
agtcattttagataact-aaaaaattattccatcctagcatttataaaaatttgaaactctca |
30931798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 61
Target Start/End: Complemental strand, 30910667 - 30910630
Alignment:
| Q |
24 |
aacaagcctgctgtgaagacaattcaagtatgttaaaa |
61 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
30910667 |
aacaagcctgctgttaagacaattcaagtatgttaaaa |
30910630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 59
Target Start/End: Complemental strand, 30920083 - 30920051
Alignment:
| Q |
27 |
aagcctgctgtgaagacaattcaagtatgttaa |
59 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |
|
|
| T |
30920083 |
aagcctgctgttaagacaattcaagtatgttaa |
30920051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University