View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20264_low_27 (Length: 265)
Name: NF20264_low_27
Description: NF20264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20264_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 31 - 249
Target Start/End: Complemental strand, 50917776 - 50917557
Alignment:
| Q |
31 |
ttgatattcattcatttatttctagttatacattagaaggactggaaactaccaacatttcctgctacaggtttacatagaaatttccataggaatgtat |
130 |
Q |
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| T |
50917776 |
ttgatattcattcatttatttctagttatacattagaaggactagaaactaccaacatttcctgctacaggtctacatagaaatttccataggaatgtat |
50917677 |
T |
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| Q |
131 |
ttgataaatccataggaattttccattagtataactctttctctggcaatcaaatcaatagtccccga-cctgattcttcctcgtaactgaattccacct |
229 |
Q |
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| T |
50917676 |
ttgataaatccataggaatgttccattagtataactctttctctggcaatcaaatcaatagtccccgatcccgattcttcctcgtaactgaattccacct |
50917577 |
T |
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| Q |
230 |
cttccgaatcaacattaatc |
249 |
Q |
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|||||||||||||||||||| |
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| T |
50917576 |
cttccgaatcaacattaatc |
50917557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 32 - 110
Target Start/End: Complemental strand, 50918385 - 50918310
Alignment:
| Q |
32 |
tgatattcattcatttatttctagttatacattagaaggactggaaactaccaacatttcctgctacaggtttacatag |
110 |
Q |
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| T |
50918385 |
tgatattcattcgtttgtttctagttatacattaga---actagaaaatacaaacatttcctgctacaggtctacatag |
50918310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 134 - 249
Target Start/End: Complemental strand, 42352372 - 42352254
Alignment:
| Q |
134 |
ataaatccataggaattttccattagtataactctttctctggcaa--tcaaatcaatagtccccga-cctgattcttcctcgtaactgaattccacctc |
230 |
Q |
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| T |
42352372 |
ataaatcaatagaaatgttccattgatataactctttctccggcacactcaaatcaatagtcaccaatcctgattcttcctcgtaactgaattccacctc |
42352273 |
T |
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| Q |
231 |
ttccgaatcaacattaatc |
249 |
Q |
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||| ||||||||| ||||| |
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| T |
42352272 |
ttctgaatcaacagtaatc |
42352254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 134 - 249
Target Start/End: Original strand, 27558553 - 27558671
Alignment:
| Q |
134 |
ataaatccataggaattttccattagtataactctttctctggcaa--tcaaatcaatagtccccga-cctgattcttcctcgtaactgaattccacctc |
230 |
Q |
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||||||| |||| ||| ||| ||| ||||||||||||||||||| |||||||||||||| || | |||||||||||||| ||||||||||||||||| |
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| T |
27558553 |
ataaatcaatagaaatgttctattgatataactctttctctggcacactcaaatcaatagtcaccaatcctgattcttcctcataactgaattccacctc |
27558652 |
T |
|
| Q |
231 |
ttccgaatcaacattaatc |
249 |
Q |
| |
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||| ||||||||| ||||| |
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| T |
27558653 |
ttctgaatcaacagtaatc |
27558671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 38 - 109
Target Start/End: Complemental strand, 42352486 - 42352415
Alignment:
| Q |
38 |
tcattcatttatttctagttatacattagaaggactggaaactaccaacatttcctgctacaggtttacata |
109 |
Q |
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|||||||||||||||||||||||||||||||| ||| |||| ||| |||||||| |||||||||| |||||| |
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| T |
42352486 |
tcattcatttatttctagttatacattagaagaactagaaaatacaaacatttcttgctacaggtctacata |
42352415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 32 - 99
Target Start/End: Original strand, 27558442 - 27558509
Alignment:
| Q |
32 |
tgatattcattcatttatttctagttatacattagaaggactggaaactaccaacatttcctgctaca |
99 |
Q |
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|||||||||||||||||||||||||||||||| ||||| |||||||| ||| | ||||| ||||||| |
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| T |
27558442 |
tgatattcattcatttatttctagttatacatcagaagaactggaaaatacatatatttcttgctaca |
27558509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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