View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20264_low_29 (Length: 262)
Name: NF20264_low_29
Description: NF20264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20264_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 10 - 239
Target Start/End: Original strand, 54714165 - 54714393
Alignment:
| Q |
10 |
agtgagatgaaccctattttattccatgcaaaacaataacgataggaagaaaataaaaatacttgagtgataatgtacactatggcaaaaacttcaattc |
109 |
Q |
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| T |
54714165 |
agtgatatgaagcctattttattccatgcaaaacaataacgataggaagaaaataaaaatact-gagtgatattgtacactatggcaaaaacttcaattc |
54714263 |
T |
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| Q |
110 |
ttctagttgtccttgctgtggcattatttctcaatggctatagtgctgctgctgaaggtgaaggaagagctaatcaactggtgaaagatgaagctggtat |
209 |
Q |
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| T |
54714264 |
ttctagttgtccttgctgtggcattatttctcaatggctatagtgctgctgctgaaggtgaaggaagagctaatcaactggtgaaagatgaagctggtat |
54714363 |
T |
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| Q |
210 |
tctgaataatgctgctgctgggggtgatgg |
239 |
Q |
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| T |
54714364 |
tctgaatagtgctgctgccgggggtgatgg |
54714393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 10 - 239
Target Start/End: Original strand, 54721085 - 54721322
Alignment:
| Q |
10 |
agtgagatgaaccctattttattccatgcaaaacaataacgataggaagaaaataaaaatacttgagtgataatgtacactatggcaaaaac-------- |
101 |
Q |
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| T |
54721085 |
agtgatatgaagcctattttattccatgcaaaacaataacgataggaaggaaataaagttact-gatagatattgtacactatggcaaaaaccagtactg |
54721183 |
T |
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| Q |
102 |
-ttcaattcttctagttgtccttgctgtggcattatttctcaatggctatagtgctgctgctgaaggtgaaggaagagctaatcaactggtgaaagatga |
200 |
Q |
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| T |
54721184 |
tttcacttgttctacttgtccttgctgtggcattaattctgaatggctatagtgcttctgctgagggtgaagtaagagctaatcaactggtgaaagatga |
54721283 |
T |
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| Q |
201 |
agctggtattctgaataatgctgctgctgggggtgatgg |
239 |
Q |
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| T |
54721284 |
agttggtactctgaatagtgctgctgctgagggtgatgg |
54721322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 149 - 205
Target Start/End: Original strand, 54721298 - 54721357
Alignment:
| Q |
149 |
atagtgctgctgctgaaggtgaaggaagagctaatca---actggtgaaagatgaagctg |
205 |
Q |
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| T |
54721298 |
atagtgctgctgctgagggtgatggaagagttaatcaattactagtgaaagatgaagctg |
54721357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 94; Significance: 6e-46; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 110 - 239
Target Start/End: Original strand, 5297346 - 5297475
Alignment:
| Q |
110 |
ttctagttgtccttgctgtggcattatttctcaatggctatagtgctgctgctgaaggtgaaggaagagctaatcaactggtgaaagatgaagctggtat |
209 |
Q |
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| T |
5297346 |
ttctagttgtccttgctgtggcattaattctgaatggctatagtgcttctgctgagggtgaagtaagagctaatcaactggtgaaagatgaatctggtac |
5297445 |
T |
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| Q |
210 |
tctgaataatgctgctgctgggggtgatgg |
239 |
Q |
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| T |
5297446 |
tctgaatagtgctgctgctgagggtgatgg |
5297475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 116 - 204
Target Start/End: Original strand, 5302783 - 5302868
Alignment:
| Q |
116 |
ttgtccttgctgtggcattatttctcaatggctatagtgctgctgctgaaggtgaaggaagagctaatcaactggtgaaagatgaagct |
204 |
Q |
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| T |
5302783 |
ttgtccttgttgtggcattatttgtgaatggctatagtgctgctg-tg--ggtgtgggaagagataatcaactggagaaagatgaagct |
5302868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 149 - 205
Target Start/End: Original strand, 5297451 - 5297510
Alignment:
| Q |
149 |
atagtgctgctgctgaaggtgaaggaagagctaatca---actggtgaaagatgaagctg |
205 |
Q |
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| T |
5297451 |
atagtgctgctgctgagggtgatggaagagttaatcaattactagtgaaagatgaagctg |
5297510 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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