View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20264_low_36 (Length: 231)
Name: NF20264_low_36
Description: NF20264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20264_low_36 |
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Alignment Details
Target: chr1 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 5754374 - 5754576
Alignment:
| Q |
1 |
atttgatttagaaaagaatgnnnnnnncacggtcagnnnnnnncacagttaacataaatggtgttttttcttgaccaaaaaacattaatggtgatttgga |
100 |
Q |
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| T |
5754374 |
atttgatttagaaaagaatgaaaaaaacacggtcagaaaaaaacacagttaacataaatggtgttttttcttgaccaaaaaacattaatggtgatttgga |
5754473 |
T |
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| Q |
101 |
tatatacacatagtaaaaggagatatataatcgtt-gggataaacttagtttcaaattccaatcatcgatggcagaagaaaatatcatggggtattagga |
199 |
Q |
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| T |
5754474 |
tatatacacatagtaaaaggagatatataatcgttgggggtaaacttagtttcaaattccaatc-------gcagaagaaaatatcatggggtattagga |
5754566 |
T |
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| Q |
200 |
cggatatgga |
209 |
Q |
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|||||||||| |
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| T |
5754567 |
cggatatgga |
5754576 |
T |
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