View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20264_low_4 (Length: 600)
Name: NF20264_low_4
Description: NF20264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20264_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 465; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 18 - 584
Target Start/End: Original strand, 2358454 - 2359020
Alignment:
| Q |
18 |
aaaaattattctacccttatgtgacttaactcacgtatgtatataacccaacgtaatttaagtcattttaaaatacaaccaatataacttaaatcatgtt |
117 |
Q |
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| T |
2358454 |
aaaaattattctacc-ttacgtgacttaactcacgtatgtgtataacccaacgtgacttaagtcatattgaaatacaaccaatataacttaaattatgtt |
2358552 |
T |
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| Q |
118 |
tcgaataccgtgagttaactcatgttggtaacaaacatgcaaaa-aatttctttgcatatcaatataacatggtatagtatagagagagtataattaaat |
216 |
Q |
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|||||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
2358553 |
tcgaataccgtgagttaacttatgtcggtaacaaacatgcaaaaaaatttctttgcatatcaatataacatggtatagtatagagagagtgcaattaaat |
2358652 |
T |
|
| Q |
217 |
ctagaaacaattgagcaccttgacacatttaaattggaaatttttatttaatatttttacacataatgttgtaaaaatagtatagcagaagtatacatta |
316 |
Q |
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| T |
2358653 |
ctggaaacaattgagcaccttgacacatttaaattggaaatttttatttaatatttttacacataatgttgtaaaaatagtatagtagaagtatacatca |
2358752 |
T |
|
| Q |
317 |
tgctgttcatgctgacatgcatgtgcatgtatcatgatgttnnnnnnnnncaaacaaaattgctattgagtcacagataatacagtagtagataaaaaca |
416 |
Q |
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| T |
2358753 |
tgctgttcatgctgacatgcatgtgcatgtatcatgatgttaaagaaaaacaaacaaaattgctattgagtcacagataatacagtagtagataaaaaca |
2358852 |
T |
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| Q |
417 |
aaaggtgtgtggcttgtaaaattcatccttaatgagttgactcaactgtcaaattcatccttaatcatgtaggaagctctcaaataaatttttgaggtta |
516 |
Q |
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| T |
2358853 |
aaaggtgtgtggcttgtcaaattcatccttaatgagttgactcaactgtcaaattcatccttaatcatgtaggaagctctcaaataaatttttgaggtta |
2358952 |
T |
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| Q |
517 |
taagtatttcagaaagatctttggatctgtcaaattttcttgatatcactctttatgaaggtacatta |
584 |
Q |
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| T |
2358953 |
taagtatttcagaaagatctttggatctgtcaaattttcttgatatcactctttatgaaggtacatta |
2359020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 198 - 433
Target Start/End: Original strand, 31643243 - 31643470
Alignment:
| Q |
198 |
agagagagtataattaaatctagaaa-caattgagcaccttgacacatttaaa-ttggaaatttttatttaatatttttacacataatgttgtaaaaata |
295 |
Q |
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| T |
31643243 |
agagagggtacaattaagtctagaaaaccattaagcaccctgacacatataaaattggaaatttt-atttaatttttttacacatgatgttgtaaaaata |
31643341 |
T |
|
| Q |
296 |
gtatagcagaagtatacattatgctgttcatgctgacatgcatgtgcatgtatcatgatgttnnnnnnnnncaaacaaaattgctattgagtcacagata |
395 |
Q |
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| T |
31643342 |
gtata-----------catcatgctgttcatgctgacatgcatgtgcatgtatcatgatgttaaaaaaaaacaaacaaaattgctattgagtcacagata |
31643430 |
T |
|
| Q |
396 |
atacag--tagtagataaaaacaaaaggtgtgtggcttgt |
433 |
Q |
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| T |
31643431 |
atacagtatagtagatagaaacaaaaggtgtgtggattgt |
31643470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 29 - 205
Target Start/End: Original strand, 28033317 - 28033495
Alignment:
| Q |
29 |
tacccttatgtgacttaactcacgtatgtatataacccaacgtaatttaagtcattttaaaatacaaccaatataacttaaatcatgtttcgaataccg- |
127 |
Q |
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| T |
28033317 |
taccctcacgtgacttaagtcacgtaaatattaaactcaacgttgcttaagtcacattaaaatacaacatacaaaacttaaatcacgttcagaacaccga |
28033416 |
T |
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| Q |
128 |
--tgagttaactcatgttggtaacaaacatgcaaaaaatttctttgcatatcaatataacatggtatagtatagagagag |
205 |
Q |
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| T |
28033417 |
cgtaagttaactcat-ttgctaacaaacatgcaatttctttctttgcatatcaacataagagggtatagtagagagagag |
28033495 |
T |
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