View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20264_low_40 (Length: 227)
Name: NF20264_low_40
Description: NF20264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20264_low_40 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 7 - 227
Target Start/End: Complemental strand, 5176164 - 5175944
Alignment:
| Q |
7 |
aacaccacattcatcaagaacagcttccatattcctatccaaatcaaacaactcatgaatgaccttacataccctatcaacctcatttggatctgaacat |
106 |
Q |
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| T |
5176164 |
aacaccacattcatcaagaacagcttccatattcctatccaaatcaaacaactcatgaatgaccttacataccctatcaacctcatttggatctgaacat |
5176065 |
T |
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| Q |
107 |
gacccactatcctcagaatcagattcaaccccactaacactacaaaatggtctataattatctaaaaacataaactttccctgaaaactagaaaagggta |
206 |
Q |
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| T |
5176064 |
gacccactatcctcagaatcagattcaaccccactaacactacaaaatggtctataattatctaaaaacataaactttaactgaaaactagaaaagggta |
5175965 |
T |
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| Q |
207 |
atccataaaaactagcaccca |
227 |
Q |
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| T |
5175964 |
atccataaaaactaccaccca |
5175944 |
T |
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Target: chr5 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 146 - 219
Target Start/End: Complemental strand, 1016721 - 1016648
Alignment:
| Q |
146 |
ctacaaaatggtctataattatctaaaaacataaactttccctgaaaactagaaaagggtaatccataaaaact |
219 |
Q |
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| T |
1016721 |
ctacaaaatggtctataattatctaaaaacataaactttccttgaaaactagaaaaggataatccatagaaact |
1016648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 206
Target Start/End: Complemental strand, 47360147 - 47360111
Alignment:
| Q |
170 |
aaaaacataaactttccctgaaaactagaaaagggta |
206 |
Q |
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||||||||||||||||| | ||||||||||||||||| |
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| T |
47360147 |
aaaaacataaactttccttaaaaactagaaaagggta |
47360111 |
T |
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