View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20264_low_5 (Length: 595)
Name: NF20264_low_5
Description: NF20264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20264_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 469; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 1 - 586
Target Start/End: Complemental strand, 29149987 - 29149395
Alignment:
| Q |
1 |
ttactctcaatttcatcgattgttacggttgcttgaattgcaagaaacaaacataactacactaatatcctataatccagtggtttatgactccgtttgg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29149987 |
ttactctcaatttcatcgattgttacggttgcttgaattgcaagaaacaaacataactacactaatatcctataatccagtggtttatgactccgtttgg |
29149888 |
T |
|
| Q |
101 |
ttcaatttcannnnnnnnaactcttnnnnnnnttgaagaaatagtaagaataaacaaagtctgaattttgcaaatgggtgaagtatatagaacaacaaag |
200 |
Q |
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|||||||||| ||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29149887 |
ttcaatttcattttttttaactcttaaaaaaatttaagaaatactaagaataaacaaagtctgaattttgcaaatgggtgaagtatatagaacaacaaag |
29149788 |
T |
|
| Q |
201 |
cctaatttagtaactttgtctaacatcctacttacatggttcatagtgaaaatggtgatatcaactcaaagacaaaggacaagtagtgatgacagacaat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29149787 |
cctaatttagtaactttgtctaacatcctacttacatggttcatagtgaaaatggtgatatcaactcaaagacaaaggacaagtagtgatgacagacaat |
29149688 |
T |
|
| Q |
301 |
cacaaaaactttgcaagttgagtgacaggttgtgaata--tttgcacaatgacattaacgagtccttcattttgtacc---aacatttatcacagctgca |
395 |
Q |
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||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
29149687 |
cac--aaactttgcaagttgagtgacaggttgtgaatatttttgcacaatgacattaacgagtccttcattttgtaccactaacatttatcacagctgca |
29149590 |
T |
|
| Q |
396 |
tgttgtgcttgtccatttttggacatactaattattacattactaacatcacaagtgaggaccacatgagtaaagagaaagttggatcaggttgaattct |
495 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||||||||| |
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| T |
29149589 |
tgttgtgcttgtccatttttggacatactaattattacattactaacatcacaagtgaggaccacatgagtaacgacagagttggatcaggttgaattct |
29149490 |
T |
|
| Q |
496 |
taacagcattatatcacacg----tatcaaccacacctttcacaagacaccagtctcccttctcgcttgttctcttgaacccttttaattcatct |
586 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |
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| T |
29149489 |
taacagcattatatcacacgtatatatcaaccacacctttcacaagacaccagtctcccttctcgcttgttctctttaacccttctaattcatct |
29149395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 8168940 - 8168886
Alignment:
| Q |
1 |
ttactctcaatttcatcgattgttacggttgcttgaattgcaagaaacaaacata |
55 |
Q |
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|||||||||| |||||| ||||||| | ||||||||||||||||||||||||||| |
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| T |
8168940 |
ttactctcaaattcatccattgttatgattgcttgaattgcaagaaacaaacata |
8168886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 2 - 67
Target Start/End: Original strand, 36020049 - 36020114
Alignment:
| Q |
2 |
tactctcaatttcatcgattgttacggttgcttgaattgcaagaaacaaacataactacactaata |
67 |
Q |
| |
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|||||||||||||||| ||||||| | ||| ||||||| ||||||||||||||| || |||||||| |
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| T |
36020049 |
tactctcaatttcatccattgttatgattgtttgaattacaagaaacaaacatagcttcactaata |
36020114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 2 - 50
Target Start/End: Complemental strand, 34741350 - 34741302
Alignment:
| Q |
2 |
tactctcaatttcatcgattgttacggttgcttgaattgcaagaaacaa |
50 |
Q |
| |
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|||||||||||||||| ||||||| | |||||||||||||||||||||| |
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| T |
34741350 |
tactctcaatttcatccattgttatgattgcttgaattgcaagaaacaa |
34741302 |
T |
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