View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20264_low_8 (Length: 500)
Name: NF20264_low_8
Description: NF20264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20264_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 443; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 16 - 489
Target Start/End: Complemental strand, 47879591 - 47879113
Alignment:
| Q |
16 |
cataatcaaactcactcccttttggcacgaagatgttgaatcctaaaattaaatttttatgccctttaaacaaatccttcaatcttgctatgacgccatt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
47879591 |
cataatcaaactcactcccttttggcacgaagatgttgaatcctaaaattaaatttttatgccctttaaacaaatccttcaatcttgctatgacaccatt |
47879492 |
T |
|
| Q |
116 |
tgtatcaattctcatagccttgaaatccttcataacatttaaaaattcatcatacttttctatctcatcttgaaactcgtcttttacagcctcgacatat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47879491 |
tgtatcaattctcatagccttgaaatccttcataacatttaaaaattcatcatacttttctatctcatcttgaaactcgtcttttacagcctcgacatat |
47879392 |
T |
|
| Q |
216 |
gctaccgctgcttccatcgtgggaacttttccataagacatgttatcgctggacatcttcgtcgcc-----aataataattaagaacacaacaataataa |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
47879391 |
gctaccgctgcttccatcgtgggaacttttccataagacgtgttatcgctggacatcttcgtcgccaagagaataataattaagaacacaacaataataa |
47879292 |
T |
|
| Q |
311 |
tagttcagttaaattcattccaattccaattcaaaattaaacagaaagataaatgaaaagaacattcgagtaaacgacgatgaggtagcacgtaccattg |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
47879291 |
tagttcagttaaattcattccaattccaattcaaaattaaacagaaagataaatgaaaagaacattcgagtaaacgacgatgaggtagcgtgtaccattg |
47879192 |
T |
|
| Q |
411 |
gatttgtggcggcagacattgagtgaaaagcgatttgtatcctgtgatgctgtgttgaaagtctaaaccaaagctctct |
489 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47879191 |
gatttgtggcggcagacattgagtgaaaagcgatttgtatcctgtgatgctgtgttgaaagtctaaaccaaagctctct |
47879113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 33 - 193
Target Start/End: Original strand, 47881467 - 47881627
Alignment:
| Q |
33 |
ccttttggcacgaagatgttgaatcctaaaattaaatttttatgccctttaaacaaatccttcaatcttgctatgacgccatttgtatcaattctcatag |
132 |
Q |
| |
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|||||||||| |||| |||||||||| || ||||||||| |||||||||||| || |||||| |||| ||| || ||| |||||||||||| ||| |
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| T |
47881467 |
ccttttggcaagaaggtgttgaatcccaagattaaatttgtatgccctttaagcagcaccttcactctttctacgagaccaccagtatcaattctcctag |
47881566 |
T |
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| Q |
133 |
ccttgaaatccttcataacatttaaaaattcatcatacttttctatctcatcttgaaactc |
193 |
Q |
| |
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||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
47881567 |
ccttgaattctttcataacatttaaaaattcatcatacttttccatctcatcttgaaactc |
47881627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 36 - 218
Target Start/End: Complemental strand, 47879808 - 47879626
Alignment:
| Q |
36 |
tttggcacgaagatgttgaatcctaaaattaaatttttatgccctttaaacaaatccttcaatcttgctatgacgccatttgtatcaattctcatagcct |
135 |
Q |
| |
|
||||||| ||| |||| ||||| |||||||||||| ||||||||||||| | ||||||| |||| || | ||||||||||||||| ||||| |
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| T |
47879808 |
tttggcagaaagttgttaaatccaaaaattaaatttgtatgccctttaaatagttccttcactcttttcgcgagacattttgtatcaattctctcagcct |
47879709 |
T |
|
| Q |
136 |
tgaaatccttcataacatttaaaaattcatcatacttttctatctcatcttgaaactcgtcttttacagcctcgacatatgct |
218 |
Q |
| |
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|| ||||||| | | | || | ||||||| |||||||||| |||||| ||||||||| ||||||| || | |||||||||| |
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| T |
47879708 |
tgcaatccttaacagctttcacaaattcaacatacttttccctctcatattgaaactcaacttttactgcatggacatatgct |
47879626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 193
Target Start/End: Complemental strand, 47311095 - 47311034
Alignment:
| Q |
132 |
gccttgaaatccttcataacatttaaaaattcatcatacttttctatctcatcttgaaactc |
193 |
Q |
| |
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||||||||||| ||||||| | ||||||||| ||||||||||| ||| |||||||||||| |
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| T |
47311095 |
gccttgaaatctttcataagttctaaaaattcttcatacttttccctcttatcttgaaactc |
47311034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 39 - 174
Target Start/End: Original strand, 532614 - 532749
Alignment:
| Q |
39 |
ggcacgaagatgttgaatcctaaaattaaatttttatgccctttaaacaaatccttcaatcttgctatgacgccatttgtatcaattctcatagccttga |
138 |
Q |
| |
|
|||| |||| |||||||||| |||||||||| | |||||||||||||||||||||| | |||| | ||| ||| ||||||||||||| |||||||| |
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| T |
532614 |
ggcaagaagttgttgaatcccaaaattaaatctgtatgccctttaaacaaatccttgactctttccgcgacaccacttgtatcaattctacaagccttga |
532713 |
T |
|
| Q |
139 |
aatccttcataacatttaaaaattcatcatactttt |
174 |
Q |
| |
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|||||||||||| |||||||| || ||||||||| |
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| T |
532714 |
aatccttcataagttttaaaaactcggcatactttt |
532749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 39 - 174
Target Start/End: Original strand, 565197 - 565332
Alignment:
| Q |
39 |
ggcacgaagatgttgaatcctaaaattaaatttttatgccctttaaacaaatccttcaatcttgctatgacgccatttgtatcaattctcatagccttga |
138 |
Q |
| |
|
|||| ||||||||||||||| |||||||||| | ||||||||||||||||| |||| | |||| | ||| ||| ||||||||||||| |||||||| |
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| T |
565197 |
ggcaagaagatgttgaatcccaaaattaaatctgtatgccctttaaacaaacccttgactctttccgcgacaccacttgtatcaattctacaagccttga |
565296 |
T |
|
| Q |
139 |
aatccttcataacatttaaaaattcatcatactttt |
174 |
Q |
| |
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|||||||||||| |||||||| || ||||||||| |
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| T |
565297 |
aatccttcataagttttaaaaactcggcatactttt |
565332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 36 - 127
Target Start/End: Original strand, 26214657 - 26214748
Alignment:
| Q |
36 |
tttggcacgaagatgttgaatcctaaaattaaatttttatgccctttaaacaaatccttcaatcttgctatgacgccatttgtatcaattct |
127 |
Q |
| |
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||||||| ||| |||| ||||| ||||| |||| ||||||||||||||||| ||||||| |||| ||||||| ||| |||||||||||| |
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| T |
26214657 |
tttggcaaaaaggtgttaaatcccaaaatcaaatctttatgccctttaaacagctccttcactctttctatgacaccagctgtatcaattct |
26214748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 84
Target Start/End: Complemental strand, 3045718 - 3045685
Alignment:
| Q |
51 |
ttgaatcctaaaattaaatttttatgccctttaa |
84 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| |
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|
| T |
3045718 |
ttgaatcctaaaattaaatatttatgccctttaa |
3045685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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